Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 9.4e-178 626.7 308 100.0
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 9.8e-151 537.0 305 87.2
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 8.3e-134 480.7 305 81.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.1e-129 466.1 300 77.0
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.1e-129 466.1 316 74.7
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.8e-128 463.0 300 76.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.2e-127 460.3 305 77.4
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.1e-122 443.7 306 72.2
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.5e-108 395.6 253 78.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 3.1e-104 382.5 313 64.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.6e-100 368.6 343 58.0
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 6.0e-100 368.2 320 59.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 7.9e-100 367.9 316 63.9
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.1e-98 364.0 306 62.1
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.1e-98 364.0 341 58.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.3e-98 362.5 311 59.8
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.3e-97 360.5 322 58.7
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.6e-97 360.1 306 61.4
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 6.2e-97 358.2 313 61.7
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.4e-96 356.3 324 59.6
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.3e-96 355.1 314 59.2
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.9e-96 354.8 298 63.4
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 2.6e-95 352.8 321 58.6
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.8e-95 351.7 298 63.1
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 9.9e-95 350.9 303 61.4
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.7e-94 350.1 310 59.4
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.4e-93 347.1 312 60.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 2.4e-93 346.3 305 59.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 4.2e-93 345.5 309 61.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 5.5e-93 345.1 317 59.0
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-92 343.6 302 60.9
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.1e-92 343.2 322 57.5
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 2.7e-92 342.8 322 58.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 2.3e-91 339.7 316 55.7
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 5.1e-91 338.6 311 57.2
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.9e-90 336.7 311 57.6
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.9e-90 336.7 312 57.7
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 2.5e-90 336.3 321 57.0
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 7.4e-90 334.7 297 60.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.8e-88 330.1 313 57.5
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.8e-88 330.1 320 54.1
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.4e-88 329.7 295 60.3
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.4e-88 329.7 309 57.6
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.4e-88 329.7 325 56.3
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 3.1e-88 329.3 311 55.9
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 4.0e-88 328.9 316 55.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 4.0e-88 328.9 318 55.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.0e-88 328.9 318 55.0
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.9e-88 328.2 295 59.3
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 6.9e-88 328.2 319 57.1
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 9.0e-88 327.8 312 55.4
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.2e-87 327.4 295 59.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.3e-86 323.9 305 60.0
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.2e-86 323.2 311 55.3
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.9e-86 322.0 311 55.0
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 4.9e-86 322.0 296 58.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 4.9e-86 322.0 316 57.6
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 6.5e-86 321.6 312 56.4
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.5e-85 319.7 309 57.9
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.6e-84 317.0 340 51.2
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.6e-84 317.0 312 57.7
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 2.1e-84 316.6 311 55.6
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.1e-84 316.6 296 57.1
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 2.7e-84 316.2 305 56.7
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.0e-83 314.3 312 54.2
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.3e-83 313.9 309 54.4
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.8e-83 313.5 308 55.5
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.8e-83 313.5 306 54.9
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.3e-83 313.2 306 55.2
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 8.7e-83 311.2 313 55.0
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.7e-83 311.2 323 52.9
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.9e-82 310.1 312 54.5
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 2.5e-82 309.7 310 53.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 5.7e-82 308.5 319 54.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 7.4e-82 308.1 313 53.7
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 8.2e-81 304.7 312 52.2
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.1e-80 302.8 313 53.7
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.2e-79 300.8 334 51.5
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.6e-79 299.7 312 51.0
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.6e-79 299.7 314 52.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.9e-79 298.5 331 51.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.9e-79 298.5 314 54.8
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.0e-78 297.7 291 53.6
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.5e-78 295.0 314 52.2
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.9e-77 293.5 329 51.1
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.2e-77 292.7 313 52.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 5.7e-74 282.0 155 90.3
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.9e-71 271.9 276 56.9
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 5.5e-69 265.4 282 51.1
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.9e-67 259.2 183 73.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 6.7e-67 258.5 323 48.9
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.5e-66 257.3 304 46.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 2.6e-66 256.5 301 46.8
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.2e-63 247.7 297 48.1
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 1.5e-63 247.3 155 80.6
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 5.5e-61 238.8 244 54.9
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.1e-60 236.9 229 56.3
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.3e-59 233.4 268 48.5
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 3.3e-58 229.6 294 48.0
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 3.3e-58 229.6 155 78.1
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 5.7e-58 228.8 265 50.6
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.2e-57 226.9 216 56.9
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.2e-55 221.1 411 35.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.7e-54 217.2 300 42.7
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.8e-54 216.1 279 48.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-52 209.9 120 87.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 6.7e-51 205.3 383 37.1
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 8.8e-51 204.9 294 45.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.7e-49 200.7 308 39.9
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.8e-48 197.2 419 34.1
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 7.7e-47 191.8 304 42.1
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 4.0e-43 179.5 236 47.5
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 2.0e-42 177.2 140 70.7
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.5e-37 160.2 292 38.0
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.5e-37 158.3 113 63.7
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-36 157.9 114 63.2
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 5.7e-34 149.1 112 61.6
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 2.7e-31 140.2 88 80.7
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 8.6e-30 135.2 138 55.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.5e-29 134.4 118 57.6
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.9e-29 134.0 123 53.7
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-28 131.3 282 33.0
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.2e-27 125.9 156 50.0
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.9e-27 125.2 86 67.4
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.2e-26 124.8 116 60.3
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.6e-26 123.6 181 40.9
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.9e-25 120.2 89 66.3
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 4.9e-25 119.4 141 46.1
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.9e-24 117.5 374 29.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.0e-19 99.8 99 56.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.7e-17 93.2 81 50.6
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-16 91.3 242 28.9
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.0e-14 83.6 102 48.0
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 8.6e-14 82.0 310 28.1
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.1e-12 75.5 92 48.9
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.5e-10 68.9 270 27.8
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.5e-07 60.1 27 100.0
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.0e-06 58.5 32 84.4
Cfa026016 Carpinus fangiana HOM05D000280 ORTHO05D000632 3.0e-06 57.0 115 33.9


User provided reference genes

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