Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G036900 Glycine max HOM05D003526 ORTHO05D004123 3.7e-36 154.5 83 100.0
Actinidia39679 Actinidia chinensis HOM05D003526 ORTHO05D004123 1.5e-21 105.9 84 71.4
VMungo0331G1243 Vigna mungo HOM05D003526 ORTHO05D004123 4.8e-20 100.9 62 87.1
Phvul.010G132400 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 2.4e-19 98.6 64 85.9
THA.LOC104815322 Tarenaya hassleriana HOM05D003526 ORTHO05D004123 9.1e-19 96.7 83 67.5
TPR.G7396 Trifolium pratense HOM05D003526 ORTHO05D004123 3.5e-18 94.7 63 79.4
Ca_05010_v3 Cicer arietinum L. HOM05D003526 ORTHO05D004123 1.1e-16 89.7 57 82.5
Psat4g183200 Pisum sativum HOM05D003526 ORTHO05D004123 1.1e-16 89.7 57 82.5
Eucgr.J02828 Eucalyptus grandis HOM05D003526 ORTHO05D004123 2.5e-16 88.6 64 78.1
EL10Ac2g02708 Beta vulgaris HOM05D003526 ORTHO05D004123 5.5e-16 87.4 63 73.0
CiPaw.01G220500 Carya illinoinensis HOM05D003526 ORTHO05D004123 5.5e-16 87.4 71 71.8
Medtr8g019700 Medicago truncatula HOM05D003526 ORTHO05D004123 5.5e-16 87.4 56 80.4
EL10Ac8g19129 Beta vulgaris HOM05D003526 ORTHO05D004123 1.6e-15 85.9 63 71.4
Eucgr.C00837 Eucalyptus grandis HOM05D003526 ORTHO05D004123 4.7e-15 84.3 63 73.0
Lj3g0009274 Lotus japonicus HOM05D003526 ORTHO05D004123 4.7e-15 84.3 56 78.6
Potri.018G065100 Populus trichocarpa HOM05D003526 ORTHO05D004123 4.7e-15 84.3 63 71.4
vmacro17176 Vaccinium macrocarpon HOM05D003526 ORTHO05D004123 4.7e-15 84.3 63 71.4
Dinv42370 Davidia involucrata HOM05D003526 ORTHO05D004123 1.0e-14 83.2 60 75.0
QL05p008227 Quercus lobata HOM05D003526 ORTHO05D004123 1.0e-14 83.2 57 78.9
Lalb_Chr07g0181061 Lupinus albus HOM05D003526 ORTHO05D004123 1.4e-14 82.8 66 69.7
Oeu049520.1 Olea europaea HOM05D003526 ORTHO05D004123 1.4e-14 82.8 58 79.3
Psat1g133000 Pisum sativum HOM05D003526 ORTHO05D004123 1.4e-14 82.8 63 73.0
TAR383G0894 Trochodendron aralioides HOM05D003526 ORTHO05D004123 1.4e-14 82.8 56 82.1
Sabra01G0140900 Salix brachista HOM05D003526 ORTHO05D004123 1.8e-14 82.4 64 75.0
Sc18g0002400 Simmondsia chinensis HOM05D003526 ORTHO05D004123 3.0e-14 81.6 58 75.9
Ah.14g085070 Amaranthus hybridus HOM05D003526 ORTHO05D004123 4.0e-14 81.3 58 74.1
Glyma.09G068000 Glycine max HOM05D003526 ORTHO05D004123 4.0e-14 81.3 62 71.0
Hma1.2p1_0797F.1_g219420 Hydrangea macrophylla HOM05D003526 ORTHO05D004123 4.0e-14 81.3 58 75.9
COL.COLO4_18133 Corchorus olitorius HOM05D003526 ORTHO05D004123 5.2e-14 80.9 58 75.9
Nn6g35591 Nelumbo nucifera HOM05D003526 ORTHO05D004123 5.2e-14 80.9 57 77.2
TPR.G31545 Trifolium pratense HOM05D003526 ORTHO05D004123 5.2e-14 80.9 63 71.4
CBR_g31704 Chara braunii HOM05D003526 ORTHO05D004123 6.8e-14 80.5 90 55.6
unitig_749.g14236 Utricularia gibba HOM05D003526 ORTHO05D004123 6.8e-14 80.5 58 77.6
MSTRG.19476 Avicennia marina HOM05D003526 ORTHO05D004123 8.8e-14 80.1 58 75.9
MELO3C015505.2 Cucumis melo HOM05D003526 ORTHO05D004123 8.8e-14 80.1 60 71.7
Glyma.15G173500 Glycine max HOM05D003526 ORTHO05D004123 8.8e-14 80.1 62 69.4
PSO421G0535 Papaver somniferum HOM05D003526 ORTHO05D004123 8.8e-14 80.1 66 71.2
TWI63G0377 Tripterygium wilfordii HOM05D003526 ORTHO05D004123 8.8e-14 80.1 58 75.9
VMungo1309G0527 Vigna mungo HOM05D003526 ORTHO05D004123 8.8e-14 80.1 61 70.5
Aa31LG8G11760 Aethionema arabicum HOM05D003526 ORTHO05D004123 1.2e-13 79.7 63 69.8
FAN23G1326 Fragaria x ananassa HOM05D003526 ORTHO05D004123 1.2e-13 79.7 65 67.7
FAN28G1609 Fragaria x ananassa HOM05D003526 ORTHO05D004123 1.2e-13 79.7 65 67.7
PGR044G2259 Punica granatum HOM05D003526 ORTHO05D004123 1.2e-13 79.7 63 68.3
Hund08715 Selenicereus undatus HOM05D003526 ORTHO05D004123 1.2e-13 79.7 57 75.4
Duzib187G1578 Durio zibethinus HOM05D003526 ORTHO05D004123 1.5e-13 79.3 58 75.9
RcHm_v2.0_Chr2g0094291 Rosa chinensis HOM05D003526 ORTHO05D004123 1.5e-13 79.3 65 66.2
Oeu002851.2 Olea europaea HOM05D003526 ORTHO05D004123 2.0e-13 79.0 57 75.4
Sed0017134 Sechium edule HOM05D003526 ORTHO05D004123 2.0e-13 79.0 62 67.7
CsaV3_1G040780 Cucumis sativus L. HOM05D003526 ORTHO05D004123 2.6e-13 78.6 60 70.0
FvH4_1g08240 Fragaria vesca HOM05D003526 ORTHO05D004123 2.6e-13 78.6 65 66.2
FAN19G0472 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.6e-13 78.6 65 66.2
FAN26G0984 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.6e-13 78.6 65 66.2
FAN26G1346 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.6e-13 78.6 65 66.2
Gohir.A07G013800 Gossypium hirsutum HOM05D003526 ORTHO05D004123 2.6e-13 78.6 58 74.1
Gohir.D07G013600 Gossypium hirsutum HOM05D003526 ORTHO05D004123 2.6e-13 78.6 58 74.1
Gorai.001G014300 Gossypium raimondii HOM05D003526 ORTHO05D004123 2.6e-13 78.6 58 74.1
vmacro06320 Vaccinium macrocarpon HOM05D003526 ORTHO05D004123 2.6e-13 78.6 58 72.4
Actinidia38465 Actinidia chinensis HOM05D003526 ORTHO05D004123 3.4e-13 78.2 61 67.2
ClCG03G015260 Citrullus lanatus HOM05D003526 ORTHO05D004123 3.4e-13 78.2 58 72.4
Phvul.009G229000 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 3.4e-13 78.2 64 70.3
Ah.09g231310 Amaranthus hybridus HOM05D003526 ORTHO05D004123 4.4e-13 77.8 58 70.7
CSS0039396 Camellia sinensis var. sinensis HOM05D003526 ORTHO05D004123 4.4e-13 77.8 58 72.4
Cpa.g.sc25.103 Carica papaya HOM05D003526 ORTHO05D004123 4.4e-13 77.8 61 70.5
Ciclev10009411m.g Citrus clementina HOM05D003526 ORTHO05D004123 4.4e-13 77.8 58 72.4
PSO063G2352 Papaver somniferum HOM05D003526 ORTHO05D004123 4.4e-13 77.8 67 70.1
AL3G43820 Arabidopsis lyrata HOM05D003526 ORTHO05D004123 5.7e-13 77.4 64 71.9
AT2G06530 Arabidopsis thaliana HOM05D003526 ORTHO05D004123 5.7e-13 77.4 64 71.9
Cc06_g11900 Coffea canephora HOM05D003526 ORTHO05D004123 5.7e-13 77.4 57 73.7
Sed0007451 Sechium edule HOM05D003526 ORTHO05D004123 5.7e-13 77.4 62 66.1
SGA_v2.0_scaffold97G29148 Striga asiatica HOM05D003526 ORTHO05D004123 5.7e-13 77.4 56 75.0
CiPaw.03G210000 Carya illinoinensis HOM05D003526 ORTHO05D004123 7.5e-13 77.0 63 65.1
DCAR_011953 Daucus carota HOM05D003526 ORTHO05D004123 7.5e-13 77.0 59 76.3
Duzib168G1450 Durio zibethinus HOM05D003526 ORTHO05D004123 9.8e-13 76.6 57 73.7
Hma1.2p1_0169F.1_g074740 Hydrangea macrophylla HOM05D003526 ORTHO05D004123 9.8e-13 76.6 57 77.2
Manes.16G097600 Manihot esculenta HOM05D003526 ORTHO05D004123 9.8e-13 76.6 61 67.2
Solyc12g009060.2 Solanum lycopersicum HOM05D003526 ORTHO05D004123 9.8e-13 76.6 58 72.4
Sopen12g003990 Solanum pennellii HOM05D003526 ORTHO05D004123 9.8e-13 76.6 58 72.4
PGSC0003DMG400000328 Solanum tuberosum HOM05D003526 ORTHO05D004123 9.8e-13 76.6 58 72.4
CSS0009903 Camellia sinensis var. sinensis HOM05D003526 ORTHO05D004123 1.3e-12 76.3 59 72.9
Ca_26620_v3 Cicer arietinum L. HOM05D003526 ORTHO05D004123 1.3e-12 76.3 57 73.7
Dinv25580 Davidia involucrata HOM05D003526 ORTHO05D004123 1.3e-12 76.3 59 74.6
Thhalv10002656m.g Eutrema salsugineum HOM05D003526 ORTHO05D004123 1.3e-12 76.3 64 70.3
CARHR103860 Cardamine hirsuta HOM05D003526 ORTHO05D004123 1.7e-12 75.9 64 70.3
Potri.001G170400 Populus trichocarpa HOM05D003526 ORTHO05D004123 1.7e-12 75.9 63 71.4
Thecc.09G081000 Theobroma cacao HOM05D003526 ORTHO05D004123 1.7e-12 75.9 57 71.9
arahy.Tifrunner.gnm1.ann1.UL7UL4 Arachis hypogaea HOM05D003526 ORTHO05D004123 2.2e-12 75.5 58 70.7
BcaB08g34512 Brassica carinata HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
BcaC01g03144 Brassica carinata HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
A03p44770 Brassica napus HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
C03p55620 Brassica napus HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
BolC3t17839H Brassica oleracea HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
BraA03t13612Z Brassica rapa HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
Migut.J00951 Erythranthe guttata HOM05D003526 ORTHO05D004123 2.2e-12 75.5 62 67.7
Sabra18G0057700 Salix brachista HOM05D003526 ORTHO05D004123 2.2e-12 75.5 60 66.7
Sp3g24760 Schrenkiella parvula HOM05D003526 ORTHO05D004123 2.2e-12 75.5 64 70.3
Actinidia35353 Actinidia chinensis HOM05D003526 ORTHO05D004123 2.8e-12 75.1 58 69.0
AUR62025178 Chenopodium quinoa HOM05D003526 ORTHO05D004123 2.8e-12 75.1 60 71.7
HanXRQChr04g0126031 Helianthus annuus HOM05D003526 ORTHO05D004123 2.8e-12 75.1 57 71.9
Lj6g0015271 Lotus japonicus HOM05D003526 ORTHO05D004123 2.8e-12 75.1 64 62.5
THA.LOC104808898 Tarenaya hassleriana HOM05D003526 ORTHO05D004123 2.8e-12 75.1 59 72.9
arahy.Tifrunner.gnm1.ann1.C7EUSB Arachis hypogaea HOM05D003526 ORTHO05D004123 3.7e-12 74.7 60 66.7
arahy.Tifrunner.gnm1.ann1.RY2Z4G Arachis hypogaea HOM05D003526 ORTHO05D004123 3.7e-12 74.7 60 66.7
CAN.G1963.11 Capsicum annuum HOM05D003526 ORTHO05D004123 3.7e-12 74.7 58 70.7
Manes.03G038100 Manihot esculenta HOM05D003526 ORTHO05D004123 3.7e-12 74.7 57 70.2
Oeu000304.1 Olea europaea HOM05D003526 ORTHO05D004123 3.7e-12 74.7 55 72.7
Atru.chr7.1664 Acer truncatum HOM05D003526 ORTHO05D004123 4.8e-12 74.3 58 70.7
arahy.Tifrunner.gnm1.ann1.G5MRUB Arachis hypogaea HOM05D003526 ORTHO05D004123 4.8e-12 74.3 58 69.0
Carub.0003s2729 Capsella rubella HOM05D003526 ORTHO05D004123 4.8e-12 74.3 64 68.8
Medtr2g041190 Medicago truncatula HOM05D003526 ORTHO05D004123 4.8e-12 74.3 57 71.9
Prupe.7G203100 Prunus persica HOM05D003526 ORTHO05D004123 4.8e-12 74.3 61 63.9
GSVIVG01015115001 Vitis vinifera HOM05D003526 ORTHO05D004123 4.8e-12 74.3 61 70.5
MBI09_g03018_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 6.3e-12 73.9 58 69.0
MBI14_g25102_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 6.3e-12 73.9 58 69.0
AUR62028995 Chenopodium quinoa HOM05D003526 ORTHO05D004123 8.3e-12 73.6 60 70.0
Lalb_Chr08g0232491 Lupinus albus HOM05D003526 ORTHO05D004123 8.3e-12 73.6 56 69.6
Peaxi162Scf00498g00721 Petunia axillaris HOM05D003526 ORTHO05D004123 8.3e-12 73.6 58 69.0
Rhsim03G0230000 Rhododendron simsii HOM05D003526 ORTHO05D004123 8.3e-12 73.6 58 65.5
ECA236G0053 Erigeron canadensis HOM05D003526 ORTHO05D004123 1.4e-11 72.8 60 68.3
Gohir.A06G075400 Gossypium hirsutum HOM05D003526 ORTHO05D004123 1.8e-11 72.4 58 65.5
unitig_26.g9178 Utricularia gibba HOM05D003526 ORTHO05D004123 2.4e-11 72.0 57 64.9
Glyma.17G051000 Glycine max HOM05D003526 ORTHO05D004123 3.1e-11 71.6 63 63.5
Lj4A909T82 Lonicera japonica HOM05D003526 ORTHO05D004123 3.1e-11 71.6 58 72.4
MD15G1213900 Malus domestica HOM05D003526 ORTHO05D004123 5.4e-11 70.9 65 63.1
Zm00001eb094970 Zea mays HOM05D003526 ORTHO05D004123 5.4e-11 70.9 58 70.7
CiPaw.04G145800 Carya illinoinensis HOM05D003526 ORTHO05D004123 7.0e-11 70.5 58 63.8
Manes.04G143300 Manihot esculenta HOM05D003526 ORTHO05D004123 7.0e-11 70.5 55 74.5
SEGI_27634 Sequoiadendron giganteum HOM05D003526 ORTHO05D004123 7.0e-11 70.5 56 71.4
Cfa003030 Carpinus fangiana HOM05D003526 ORTHO05D004123 9.1e-11 70.1 58 63.8
CDE02G2200 Ceratophyllum demersum HOM05D003526 ORTHO05D004123 9.1e-11 70.1 61 65.6
CDE09G0837 Ceratophyllum demersum HOM05D003526 ORTHO05D004123 9.1e-11 70.1 61 65.6
CsaV3_7G034540 Cucumis sativus L. HOM05D003526 ORTHO05D004123 9.1e-11 70.1 58 74.1
Gorai.010G086700 Gossypium raimondii HOM05D003526 ORTHO05D004123 9.1e-11 70.1 58 65.5
PGR102G0404 Punica granatum HOM05D003526 ORTHO05D004123 9.1e-11 70.1 59 69.5
Rhsim05G0012600 Rhododendron simsii HOM05D003526 ORTHO05D004123 9.1e-11 70.1 63 63.5
TWI34G1673 Tripterygium wilfordii HOM05D003526 ORTHO05D004123 9.1e-11 70.1 58 70.7
HanXRQChr12g0354141 Helianthus annuus HOM05D003526 ORTHO05D004123 1.2e-10 69.7 58 65.5
MD02G1086700 Malus domestica HOM05D003526 ORTHO05D004123 1.2e-10 69.7 63 63.5
CANSAT56G1275 Cannabis sativa HOM05D003526 ORTHO05D004123 1.6e-10 69.3 60 68.3
MBI05_g06550_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 1.6e-10 69.3 74 55.4
ATR0559G333 Amborella trichopoda HOM05D003526 ORTHO05D004123 2.7e-10 68.6 58 65.5
Zm00001eb303830 Zea mays HOM05D003526 ORTHO05D004123 2.7e-10 68.6 58 67.2
Aqoxy2G04049 Aquilegia oxysepala HOM05D003526 ORTHO05D004123 3.5e-10 68.2 56 67.9
Aqoxy7G02082 Aquilegia oxysepala HOM05D003526 ORTHO05D004123 3.5e-10 68.2 57 66.7
Lju5057A0G54 Lonicera japonica HOM05D003526 ORTHO05D004123 4.5e-10 67.8 58 69.0
Lsat_1_v5_gn_5_141861 Lactuca sativa HOM05D003526 ORTHO05D004123 7.7e-10 67.0 60 66.7
QL02p061059 Quercus lobata HOM05D003526 ORTHO05D004123 7.7e-10 67.0 59 57.6
SalBow6G5462 Salvia bowleyana HOM05D003526 ORTHO05D004123 7.7e-10 67.0 56 69.6
ClCG09G000920 Citrullus lanatus HOM05D003526 ORTHO05D004123 1.0e-09 66.6 56 73.2
MELO3C024361.2 Cucumis melo HOM05D003526 ORTHO05D004123 1.0e-09 66.6 56 73.2
ECA234G2483 Erigeron canadensis HOM05D003526 ORTHO05D004123 1.7e-09 65.9 58 63.8
Peaxi162Scf00240g00129 Petunia axillaris HOM05D003526 ORTHO05D004123 2.2e-09 65.5 52 71.2
Potri.006G144300 Populus trichocarpa HOM05D003526 ORTHO05D004123 2.2e-09 65.5 60 65.0
Phvul.003G132700 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 2.9e-09 65.1 60 63.3
SGA_v2.0_scaffold91G28078 Striga asiatica HOM05D003526 ORTHO05D004123 5.0e-09 64.3 53 67.9
Haze_25970 Corylus avellana HOM05D003526 ORTHO05D004123 6.5e-09 63.9 59 61.0
Sed0004921 Sechium edule HOM05D003526 ORTHO05D004123 6.5e-09 63.9 57 66.7
HPP92_012587 Vanilla planifolia HOM05D003526 ORTHO05D004123 8.5e-09 63.5 55 63.6
Nitab4.5_0000073g0030 Nicotiana tabacum HOM05D003526 ORTHO05D004123 1.9e-08 62.4 54 61.1
Nitab4.5_0001866g0010 Nicotiana tabacum HOM05D003526 ORTHO05D004123 1.9e-08 62.4 53 60.4
Os07g0236800 Oryza sativa ssp. japonica HOM05D003526 ORTHO05D004123 3.2e-08 61.6 58 65.5
SEGI_29805 Sequoiadendron giganteum HOM05D003526 ORTHO05D004123 5.5e-08 60.8 57 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1035 Anthoceros agrestis HOM05D003526 ORTHO05D004123 7.2e-08 60.5 66 60.6
DCAR_024729 Daucus carota HOM05D003526 ORTHO05D004123 9.4e-08 60.1 56 66.1
TAR626G1068 Trochodendron aralioides HOM05D003526 ORTHO05D004123 1.2e-07 59.7 51 70.6
Pp3c13_8060 Physcomitrium patens HOM05D003526 ORTHO05D004123 4.7e-07 57.8 66 54.5
Os11g0703400 Oryza sativa ssp. japonica HOM05D003526 ORTHO05D004123 6.1e-07 57.4 55 61.8
SMO169G0060 Selaginella moellendorffii HOM05D003526 ORTHO05D004123 8.0e-07 57.0 64 53.1
MCO01G752 Micromonas commoda HOM05D003526 ORTHO05D004123 1.8e-06 55.8 90 42.2
VMungo1215G2335 Vigna mungo HOM05D003526 ORTHO05D004123 2.3e-06 55.5 53 60.4
Pp3c3_3880 Physcomitrium patens HOM05D003526 ORTHO05D004123 4.0e-06 54.7 66 50.0
Mapoly0013s0110 Marchantia polymorpha HOM05D003526 ORTHO05D004123 5.2e-06 54.3 62 53.2
Cre04.g213450 Chlamydomonas reinhardtii HOM05D003526 ORTHO05D004123 8.8e-06 53.5 67 53.7


User provided reference genes

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