Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 0.0e+00 1360.5 702 100.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 0.0e+00 1202.6 702 90.0
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 0.0e+00 1176.8 704 87.4
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 0.0e+00 1162.9 703 86.2
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 0.0e+00 1134.4 703 84.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 0.0e+00 1081.6 705 80.7
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 0.0e+00 1077.0 703 81.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 0.0e+00 1075.1 711 80.3
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.1e-309 1066.2 703 80.2
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.2e-308 1062.8 712 79.8
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.2e-308 1062.8 713 79.1
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 3.0e-296 1021.5 708 76.6
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 6.7e-264 914.1 717 70.4
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.7e-259 899.4 714 68.2
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 7.2e-258 894.0 713 68.0
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.7e-257 891.3 730 67.0
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 4.7e-257 891.3 714 66.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.4e-256 889.8 714 67.8
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 4.4e-255 884.8 713 66.3
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.1e-253 880.2 707 67.2
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 5.0e-251 871.3 714 66.7
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.9e-250 869.4 713 64.5
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 5.5e-250 867.8 713 65.9
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.0e-248 861.7 730 64.9
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.0e-247 859.4 712 65.3
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 5.7e-247 857.8 705 67.5
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 7.5e-247 857.4 731 65.0
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.7e-246 856.3 714 65.5
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.8e-245 852.8 715 65.0
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.7e-244 847.4 715 65.7
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.2e-242 841.6 714 65.3
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 9.4e-242 840.5 721 64.6
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.8e-240 836.3 705 65.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.3e-240 835.9 714 63.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-239 832.8 716 64.1
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.4e-239 831.6 712 64.2
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 7.5e-239 830.9 711 64.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.8e-239 830.5 712 64.9
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.8e-239 830.5 712 64.5
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.3e-238 830.1 712 63.6
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.7e-238 829.7 699 65.7
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.8e-238 828.9 714 63.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.3e-238 827.8 715 63.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.0e-237 824.3 712 64.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 2.7e-236 822.4 695 64.3
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-234 816.6 714 63.2
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.5e-234 816.6 722 62.5
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.2e-234 814.3 704 64.9
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 7.2e-234 814.3 723 62.5
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.8e-233 812.4 712 63.5
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 3.0e-232 808.9 713 63.4
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.0e-232 808.5 711 63.3
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.6e-231 805.8 711 62.6
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.1e-229 800.4 734 61.3
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.1e-229 798.5 714 62.5
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 4.3e-226 788.5 701 63.3
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.0e-224 781.9 713 60.9
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.3e-222 776.9 719 60.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.9e-222 775.0 706 60.9
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.3e-219 766.1 705 60.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 3.0e-219 765.8 718 60.0
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.6e-217 760.0 703 61.2
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 4.0e-216 755.4 714 60.4
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.0e-215 753.1 713 60.9
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 7.5e-215 751.1 713 59.3
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.2e-214 749.6 710 60.0
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.9e-214 749.2 712 60.1
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 2.9e-214 749.2 715 59.3
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.1e-213 747.3 725 59.3
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.4e-213 746.9 709 60.4
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 6.0e-212 741.5 715 58.6
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.3e-211 739.6 711 58.2
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 6.6e-211 738.0 713 58.8
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.9e-210 736.5 711 58.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 5.6e-210 734.9 725 57.9
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.2e-209 733.8 714 58.8
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.8e-208 729.9 727 57.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.2e-208 728.4 714 58.8
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 6.8e-208 728.0 715 59.0
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 8.9e-208 727.6 714 59.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 1.2e-207 727.2 714 59.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.5e-207 726.9 714 58.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.6e-207 726.1 714 59.4
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.7e-206 723.4 714 59.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.2e-206 723.0 714 59.0
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.2e-206 723.0 714 59.0
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.2e-206 723.0 714 59.0
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 4.9e-206 721.8 711 58.9
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 6.4e-206 721.5 715 58.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 6.4e-206 721.5 716 58.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 6.4e-206 721.5 712 58.0
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.4e-205 720.3 716 57.3
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.1e-204 716.5 716 57.3
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.7e-204 716.1 715 58.9
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.0e-203 714.1 714 57.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 5.1e-203 711.8 714 57.4
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.3e-202 708.8 709 56.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.1e-201 706.4 715 57.5
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 2.0e-199 699.9 719 57.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 4.9e-198 695.3 727 56.3
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 6.4e-198 694.9 716 56.7
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.9e-197 693.3 719 56.2
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 9.0e-192 674.5 713 55.8
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 9.0e-192 674.5 718 56.3
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.2e-190 669.8 708 56.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.9e-190 668.7 716 54.7
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 4.2e-189 665.6 720 56.0
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.3e-187 660.6 720 55.6
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.7e-187 660.2 871 48.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 7.3e-186 654.8 717 54.8
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.8e-185 652.1 717 53.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 6.9e-184 648.3 731 53.9
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 4.9e-182 642.1 643 56.8
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 6.7e-179 631.7 722 52.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 8.1e-177 624.8 721 52.4
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.4e-176 623.2 718 52.8
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.6e-172 610.5 697 52.2
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 3.7e-169 599.4 695 52.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 4.0e-168 595.9 695 52.1
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 6.3e-161 572.0 713 51.1
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 4.1e-160 569.3 717 50.3
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.0e-158 564.7 714 49.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.4e-152 544.3 383 74.2
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.4e-149 534.3 731 48.2
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 7.9e-148 528.5 609 51.9
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.5e-143 514.2 701 48.2
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.0e-142 511.5 382 69.9
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.8e-142 509.6 732 45.5
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.4e-141 507.7 374 72.7
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-135 487.3 378 68.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-135 487.3 378 68.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 8.8e-131 471.9 322 78.6
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 4.1e-128 463.0 549 51.2
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.7e-126 457.6 322 74.8
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 3.4e-106 390.2 390 54.1
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.1e-104 385.2 391 56.0
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 6.6e-102 375.9 733 38.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 8.0e-100 369.0 768 36.8
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 5.4e-96 356.3 738 37.5
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.2e-96 355.5 491 45.4
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 4.6e-95 353.2 727 37.4
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.8e-95 352.4 628 40.0
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.9e-81 307.4 252 66.7
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.8e-66 256.5 413 45.3
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 7.4e-61 239.6 333 44.1
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 4.0e-59 233.8 487 35.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.5e-58 231.9 345 44.6
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.1e-55 221.5 154 77.3
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.3e-54 218.8 537 33.5
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-50 204.9 346 41.9
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-44 185.7 169 63.9
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 9.0e-43 179.5 165 58.2
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.2e-40 170.6 229 43.7
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.5e-40 170.2 216 44.0
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.4e-30 139.0 387 29.2
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.2e-28 131.7 365 30.4
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.1e-24 119.4 69 85.5
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 1.4e-24 119.0 69 85.5
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 2.6e-21 108.2 492 26.6
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.3e-20 103.6 57 91.2
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-19 101.7 62 79.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.1e-16 92.8 51 86.3
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.1e-16 92.8 79 53.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 9.4e-16 89.7 51 84.3
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.2e-15 89.4 157 38.2
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.0e-15 86.7 85 55.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 6.8e-14 83.6 59 72.9
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.5e-13 82.4 87 54.0
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.8e-12 78.2 420 26.4
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 1.3e-09 69.3 101 43.6
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.6e-07 62.4 109 34.9
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.1e-07 62.0 59 54.2


User provided reference genes

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