Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.5e-248 861.7 448 100.0
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 7.1e-235 817.0 452 96.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.3e-225 785.4 443 92.3
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.7e-207 726.1 458 82.1
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.4e-205 718.4 457 82.5
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 8.5e-204 713.8 451 83.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.5e-200 703.0 450 81.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 7.4e-200 700.7 452 81.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 6.3e-199 697.6 462 79.9
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 8.2e-199 697.2 459 80.8
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.6e-197 693.0 452 80.5
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.0e-189 666.0 459 76.3
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.2e-185 651.4 456 75.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.0e-184 649.4 451 74.9
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.6e-184 649.0 455 74.3
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 9.8e-184 647.1 456 75.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.3e-183 644.4 457 74.2
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 8.3e-183 644.0 441 77.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.4e-182 643.3 453 76.2
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 9.1e-182 640.6 453 75.9
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.2e-181 640.2 453 75.9
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 5.9e-181 637.9 456 75.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.0e-180 637.1 453 75.3
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.3e-180 636.0 457 75.1
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 6.6e-180 634.4 453 74.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.6e-180 634.4 454 74.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 3.3e-179 632.1 458 73.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.5e-179 631.3 453 75.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 453 74.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.8e-178 629.0 458 74.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.8e-178 629.0 458 74.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.7e-178 628.2 438 75.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 6.1e-178 627.9 462 74.2
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.8e-177 626.3 455 73.2
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.3e-177 625.9 454 74.7
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 6.8e-177 624.4 454 73.1
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 8.9e-177 624.0 451 72.5
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.5e-176 623.2 464 71.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 7.5e-176 620.9 455 73.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.7e-175 618.6 452 72.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 4.9e-175 618.2 452 72.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-174 617.1 460 71.3
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.5e-173 612.1 437 73.7
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.9e-173 611.3 463 70.0
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 7.8e-173 610.9 454 72.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.3e-172 609.4 452 72.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.1e-171 607.1 449 72.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.5e-171 606.7 457 71.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.8e-170 602.4 457 71.8
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.8e-169 599.7 429 74.4
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.8e-169 599.7 442 71.7
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.0e-169 598.6 452 71.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.0e-169 598.6 452 71.0
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.0e-169 598.6 461 70.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 4.0e-169 598.6 459 70.4
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.2e-169 598.2 455 70.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 6.8e-169 597.8 453 71.3
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 9.8e-168 594.0 458 68.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 9.8e-168 594.0 452 69.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.7e-167 593.2 456 70.2
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.2e-167 592.8 455 70.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.9e-166 589.7 453 69.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.2e-166 589.0 419 72.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.1e-166 588.6 362 83.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 9.2e-166 587.4 455 68.6
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 7.8e-165 584.3 456 68.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.3e-164 583.6 454 69.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.7e-164 583.2 454 68.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.7e-164 583.2 362 82.3
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 2.3e-164 582.8 461 67.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-164 582.4 454 69.4
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.9e-164 582.0 455 70.1
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 8.6e-164 580.9 453 68.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 8.6e-164 580.9 452 66.4
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.1e-163 580.5 454 68.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-163 580.5 454 68.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.1e-163 580.5 451 69.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.5e-163 579.3 456 68.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.6e-163 578.2 448 68.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.2e-162 577.0 453 68.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.2e-162 577.0 446 68.8
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.5e-160 570.1 460 69.1
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.4e-160 568.9 464 67.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.4e-160 568.5 452 68.6
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 9.8e-160 567.4 452 68.6
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 9.8e-160 567.4 448 67.2
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.2e-159 566.2 437 68.6
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 6.4e-159 564.7 432 70.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 6.4e-159 564.7 448 67.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 6.4e-159 564.7 432 70.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 6.4e-159 564.7 432 70.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-158 563.9 448 66.7
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.6e-157 560.1 439 68.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.6e-157 558.5 449 67.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-155 553.5 458 66.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-155 553.5 458 66.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.4e-152 542.0 341 79.5
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.6e-149 533.5 364 73.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.1e-147 527.3 403 68.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.5e-144 516.9 454 64.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-140 503.8 449 62.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.2e-135 486.5 452 60.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.9e-134 483.4 320 77.8
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.1e-129 466.1 311 77.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.8e-128 461.8 307 77.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.5e-125 452.6 290 79.3
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 3.4e-120 436.0 369 62.6
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 9.9e-120 434.5 282 79.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.6e-117 427.2 369 61.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.6e-117 427.2 371 61.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.1e-117 426.8 376 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.3e-116 424.1 366 59.6
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.1e-113 414.5 393 54.5
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.4e-113 413.3 295 70.8
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.1e-113 412.9 280 72.1
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.6e-106 390.6 284 73.2
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 9.0e-105 384.8 367 58.0
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.8e-103 379.4 368 56.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.8e-100 368.2 300 63.3
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.3e-99 366.3 357 56.6
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.2e-98 363.6 385 53.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.3e-97 359.0 367 54.5
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 7.2e-94 348.6 361 51.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 5.0e-87 325.9 364 51.6
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.9e-86 323.9 377 48.8
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 7.4e-83 312.0 243 68.3
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.2e-70 270.0 332 50.3
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.7e-53 213.0 150 72.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-52 210.3 345 41.2
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 5.2e-44 183.0 222 50.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-41 175.3 140 65.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.0e-39 167.2 163 52.8
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-35 154.5 119 65.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-35 152.9 88 84.1
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.4e-33 147.5 114 63.2
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.6e-31 139.0 171 50.9
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 7.1e-25 119.4 73 84.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-20 105.5 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.2e-17 93.6 92 52.2
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.8e-13 80.9 88 47.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-10 71.6 56 67.9
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 2.1e-08 64.7 165 34.5


User provided reference genes

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