Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 0.0e+00 1186.0 576 100.0
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 0.0e+00 1147.5 576 96.5
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 0.0e+00 1114.8 576 93.9
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.3e-310 1068.1 579 87.9
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 4.3e-309 1063.9 579 88.1
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 3.4e-306 1054.3 579 87.4
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 2.7e-303 1044.6 593 85.2
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 3.8e-297 1024.2 574 85.9
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.0e-289 999.6 576 83.5
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.8e-286 988.8 570 83.9
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.3e-285 984.6 570 83.0
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.3e-284 982.6 569 83.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 6.3e-284 980.3 576 80.6
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 6.9e-283 976.9 570 83.0
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 2.0e-282 975.3 557 82.8
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.0e-281 973.0 591 79.0
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-279 966.1 607 76.9
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 6.1e-279 963.8 566 82.7
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 7.9e-279 963.4 579 79.8
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 7.9e-279 963.4 579 79.3
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.0e-278 963.0 562 81.3
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.8e-278 962.2 576 80.7
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.0e-278 961.4 558 81.0
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 6.3e-276 953.7 578 78.5
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.1e-275 953.0 559 80.0
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.4e-275 951.8 555 80.2
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.4e-275 951.8 578 78.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.1e-275 951.4 572 79.2
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.2e-274 949.5 577 78.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 1.5e-274 949.1 577 78.2
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.5e-274 949.1 578 78.2
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.5e-274 947.6 559 80.5
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 5.9e-274 947.2 576 79.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 7.7e-274 946.8 561 79.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.2e-273 945.3 550 80.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.9e-272 942.2 558 80.1
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 4.2e-272 941.0 545 80.2
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.7e-271 937.6 571 80.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 4.7e-271 937.6 571 80.0
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 4.7e-271 937.6 571 78.3
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 5.1e-270 934.1 561 78.8
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 8.8e-270 933.3 569 78.9
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.5e-269 932.6 534 82.6
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.5e-269 932.6 561 77.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.4e-269 931.0 539 82.0
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 8.2e-268 926.8 563 77.6
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.8e-267 925.6 561 77.4
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.4e-267 925.2 568 77.8
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 7.0e-267 923.7 548 78.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.2e-266 922.9 555 78.0
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 7.7e-266 920.2 559 78.5
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.7e-265 919.1 544 79.4
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 3.8e-265 917.9 544 80.3
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 8.5e-265 916.8 597 73.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 8.5e-265 916.8 557 78.8
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.4e-264 916.0 555 77.5
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 4.2e-264 914.4 558 77.8
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 9.4e-264 913.3 557 77.4
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.6e-263 912.5 564 76.6
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.8e-262 909.1 544 79.8
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.0e-261 905.6 522 81.0
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.1e-259 899.8 554 76.9
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 7.0e-259 897.1 563 76.9
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.2e-258 896.3 550 76.7
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.6e-258 896.0 574 74.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.3e-257 892.9 555 74.6
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.9e-257 891.7 553 75.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 5.0e-257 891.0 556 75.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.5e-256 889.4 549 77.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.5e-256 888.6 535 77.6
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.6e-255 885.9 583 75.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 2.3e-254 882.1 556 74.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 6.7e-254 880.6 585 73.5
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 8.8e-254 880.2 556 74.6
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-253 879.8 558 75.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.2e-252 875.5 532 76.5
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.8e-251 872.5 545 75.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.8e-251 872.5 532 76.5
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 4.1e-251 871.3 545 74.9
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.6e-250 869.4 532 76.1
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.7e-250 868.6 563 73.4
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.0e-249 866.7 561 73.1
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.7e-249 865.9 517 78.1
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.7e-249 865.9 542 74.7
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.2e-249 865.5 532 75.8
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.2e-249 865.5 536 77.2
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.8e-249 864.8 544 73.2
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 6.5e-249 864.0 535 75.9
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.2e-248 861.3 534 75.3
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 5.5e-248 860.9 533 76.2
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.2e-247 859.8 533 75.2
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 8.0e-247 857.1 563 73.7
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.4e-246 856.3 545 73.9
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 3.0e-246 855.1 556 73.2
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.0e-246 855.1 544 73.7
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.6e-245 852.0 563 72.8
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 2.6e-245 852.0 563 73.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.6e-245 852.0 563 72.8
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 9.8e-245 850.1 542 74.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.8e-244 848.6 542 74.0
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.3e-244 847.4 511 79.8
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 8.3e-244 847.0 558 72.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 8.3e-244 847.0 542 73.6
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 8.3e-244 847.0 542 73.6
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.4e-243 846.3 542 73.4
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 7.0e-243 844.0 561 72.2
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 3.3e-240 835.1 576 69.8
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.2e-238 827.8 549 74.5
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 8.9e-238 827.0 567 71.6
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.4e-237 825.1 559 70.5
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 7.5e-237 823.9 518 75.1
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 8.3e-236 820.5 544 73.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.9e-233 812.0 524 73.9
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 2.5e-232 808.9 495 78.4
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.0e-229 799.3 546 71.4
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 9.8e-229 797.0 545 70.8
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.3e-225 785.8 522 73.9
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.4e-222 776.5 514 71.8
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 8.3e-220 767.3 547 67.8
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 3.5e-218 761.9 568 66.5
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.0e-217 758.8 518 70.8
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.6e-216 754.6 558 66.7
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.9e-209 731.9 546 66.1
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.0e-201 705.7 481 71.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 7.8e-194 681.0 564 62.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.3e-191 673.7 579 60.1
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.1e-190 669.1 557 61.4
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 3.4e-189 665.6 416 77.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.2e-188 662.9 584 58.0
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 5.9e-149 531.9 337 74.5
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.3e-134 482.3 278 80.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.6e-130 469.5 322 69.3
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.5e-128 464.2 263 87.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.2e-127 460.3 368 61.1
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.5e-123 446.8 561 48.8
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 8.0e-122 441.8 350 64.0
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.0e-110 402.1 294 68.0
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.9e-99 367.5 217 73.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 2.1e-98 364.0 295 61.7
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 9.9e-96 355.1 217 79.3
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 8.6e-92 342.0 272 63.2
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.1e-81 307.0 251 62.9
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 6.0e-77 292.7 581 33.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 4.8e-74 283.1 197 71.1
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.9e-71 273.1 201 66.7
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 5.5e-62 243.0 438 32.0
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.5e-61 240.4 144 74.3
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 4.6e-53 213.4 229 47.6
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.4e-49 201.1 133 69.9
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 5.3e-49 199.9 138 71.7
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.0e-36 159.1 100 75.0
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-30 138.7 104 55.8
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.5e-30 137.9 124 53.2
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.0e-28 131.0 177 44.1
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 9.7e-27 125.9 106 55.7
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.2e-22 110.9 62 77.4
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 9.4e-22 109.4 121 49.6
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 9.8e-19 99.4 79 59.5
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.0e-15 87.0 55 72.7
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.4e-09 68.2 43 72.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 3.8e-07 60.8 70 35.7
Migut.D01577 Erythranthe guttata HOM05D000082 ORTHO05D000038 8.6e-07 59.7 64 37.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 8.6e-07 59.7 63 36.5
Peaxi162Scf00038g02344 Petunia axillaris HOM05D000440 ORTHO05D008998 1.1e-06 59.3 88 35.2
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.1e-06 59.3 65 36.9
Eucgr.A01934 Eucalyptus grandis HOM05D000082 ORTHO05D008126 2.5e-06 58.2 79 36.7
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 4.3e-06 57.4 55 43.6
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 4.3e-06 57.4 56 42.9
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.3e-06 57.4 55 43.6
Haze_12880 Corylus avellana HOM05D000082 ORTHO05D028617 7.3e-06 56.6 72 31.9
Haze_14519 Corylus avellana HOM05D000082 ORTHO05D000038 7.3e-06 56.6 57 35.1
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 7.3e-06 56.6 55 32.7
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 7.3e-06 56.6 55 43.6
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.3e-06 56.6 55 43.6
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.3e-06 56.6 55 43.6
Phvul.003G034000 Phaseolus vulgaris HOM05D000459 ORTHO05D001197 7.3e-06 56.6 69 36.2
Cfa007568 Carpinus fangiana HOM05D000082 ORTHO05D000038 9.5e-06 56.2 50 38.0
Thhalv10017563m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 9.5e-06 56.2 55 40.0


User provided reference genes

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