Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 3.7e-209 731.5 426 100.0
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 4.5e-186 654.8 434 87.1
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 2.5e-181 639.0 383 96.3
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 2.4e-179 632.5 433 82.4
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 4.6e-175 618.2 433 85.5
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 1.6e-172 609.8 453 81.5
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 5.3e-171 604.7 435 81.8
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 2.6e-170 602.4 436 78.9
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 3.4e-170 602.1 439 79.0
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 7.6e-170 600.9 439 77.2
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 2.2e-169 599.4 436 78.0
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 1.2e-167 593.6 437 77.6
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.6e-167 593.2 433 78.5
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 2.3e-166 589.3 437 76.9
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 2.5e-165 585.9 325 93.5
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 2.5e-165 585.9 433 76.9
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 2.8e-164 582.4 438 76.0
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 4.8e-164 581.6 437 76.0
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 4.8e-164 581.6 438 76.0
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 4.8e-164 581.6 438 75.8
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 4.8e-164 581.6 438 76.3
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 1.1e-163 580.5 435 76.3
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.4e-163 580.1 437 76.0
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 2.4e-163 579.3 439 74.7
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 2.4e-163 579.3 437 75.3
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 4.1e-163 578.6 438 76.0
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 6.9e-163 577.8 437 75.3
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 2.6e-162 575.9 435 76.1
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 3.8e-161 572.0 443 74.3
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 3.8e-161 572.0 428 77.1
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 8.5e-161 570.9 435 76.3
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 1.9e-160 569.7 432 75.9
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 1.9e-160 569.7 433 74.6
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 7.2e-160 567.8 436 77.8
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 7.2e-160 567.8 428 75.7
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 3.6e-159 565.5 465 72.7
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.0e-158 563.9 438 69.6
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 1.8e-158 563.1 438 72.6
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.1e-158 561.6 432 75.7
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 8.8e-158 560.8 436 74.8
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 2.5e-157 559.3 437 73.2
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 7.4e-157 557.8 433 71.6
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 1.7e-156 556.6 435 73.8
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.7e-156 556.6 431 74.9
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 8.2e-156 554.3 435 66.0
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.8e-155 553.1 436 74.8
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.6e-154 549.3 456 61.8
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 3.8e-153 545.4 451 72.5
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 4.2e-152 542.0 453 60.7
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 4.7e-151 538.5 436 73.2
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 7.9e-151 537.7 431 70.3
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 3.9e-150 535.4 408 75.0
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 3.9e-150 535.4 426 72.8
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 2.0e-149 533.1 464 67.7
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 1.7e-148 530.0 405 75.8
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 5.5e-144 515.0 408 73.8
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.0e-142 510.8 432 69.4
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.1e-141 507.3 432 58.8
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 2.6e-141 506.1 432 67.4
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 5.7e-141 505.0 434 67.5
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 1.7e-140 503.4 437 68.6
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 2.2e-140 503.1 427 69.1
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 4.8e-140 501.9 559 50.1
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 1.4e-139 500.4 495 60.2
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.4e-139 500.4 433 67.7
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.6e-138 496.1 601 46.9
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 5.9e-138 495.0 464 56.7
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 2.9e-137 492.7 444 66.9
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 1.6e-135 486.9 434 67.1
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 2.7e-135 486.1 438 66.9
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 4.7e-135 485.3 438 66.9
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 6.1e-135 485.0 435 66.7
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.0e-134 484.2 420 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 1.4e-134 483.8 433 55.7
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 1.8e-134 483.4 430 65.3
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 4.0e-134 482.3 424 57.1
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 1.3e-132 477.2 426 65.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 4.8e-132 475.3 394 60.4
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 8.2e-132 474.6 437 65.4
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 9.1e-131 471.1 432 56.5
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 9.1e-131 471.1 432 56.7
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 1.6e-127 460.3 339 79.6
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.6e-127 459.1 462 60.6
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.1e-123 447.6 441 56.0
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.1e-123 446.0 444 59.0
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 7.0e-123 444.9 454 52.9
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.2e-122 444.1 386 69.9
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 2.1e-111 406.8 252 77.4
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 5.0e-105 385.6 422 58.1
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.5e-104 384.0 437 60.2
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.1e-103 380.2 436 53.7
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 5.6e-96 355.5 292 77.1
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 6.6e-81 305.4 220 90.5
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.1e-78 296.6 322 50.9
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.4e-75 287.0 267 57.7
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 2.2e-68 263.8 222 64.0
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.1e-59 235.0 395 38.2
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.3e-55 221.5 132 78.0
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.6e-55 221.1 188 69.7
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 2.7e-50 203.8 147 98.0
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 8.2e-47 192.2 178 62.4
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.2e-45 188.3 348 36.2
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 1.7e-44 184.5 160 76.9
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.8e-41 174.5 188 65.4
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 5.3e-38 162.9 95 83.2
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 5.9e-29 132.9 91 75.8
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 6.1e-26 122.9 99 68.7
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 6.1e-26 122.9 122 56.6
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 2.3e-25 120.9 56 89.3
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 3.0e-25 120.6 113 52.2
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.6e-21 107.5 144 37.5
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.5e-21 107.1 103 54.4
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 3.2e-19 100.5 136 47.8
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 3.2e-19 100.5 95 54.7
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 1.6e-18 98.2 62 82.3
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.4e-17 95.1 66 66.7
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 3.0e-17 94.0 76 60.5
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 5.4e-14 83.2 50 76.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 5.9e-13 79.7 41 73.2
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 3.8e-12 77.0 40 90.0
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 3.7e-07 60.5 180 24.4
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.4e-06 57.8 92 44.6
Os06g0678650 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 9.1e-06 55.8 212 24.1
vmacro21345 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 9.1e-06 55.8 190 23.7


User provided reference genes

Program Settings