Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 7.6e-161 570.5 292 100.0
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 3.2e-151 538.5 292 94.9
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 4.3e-140 501.5 298 87.9
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.4e-138 495.7 297 87.5
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.0e-120 434.9 296 80.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 6.5e-120 434.5 296 80.1
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.9e-111 406.4 304 74.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.3e-109 399.4 273 79.9
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 5.2e-109 398.3 296 75.0
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.9e-104 382.5 274 74.8
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.9e-104 382.5 312 70.2
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.4e-103 377.5 266 75.6
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.1e-102 376.3 275 72.7
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 4.0e-101 372.1 250 78.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 5.2e-101 371.7 262 74.0
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 6.7e-101 371.3 249 78.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.1e-100 370.5 303 69.3
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 4.4e-100 368.6 271 71.6
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 5.7e-100 368.2 248 77.0
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 5.7e-100 368.2 303 66.7
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.7e-99 366.7 279 70.6
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.8e-99 365.9 256 75.8
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.8e-99 365.2 298 68.1
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 8.2e-99 364.4 295 66.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 8.2e-99 364.4 234 78.2
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.1e-98 364.0 281 70.5
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.8e-98 363.2 264 72.3
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.4e-98 362.8 317 64.7
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.4e-98 362.8 276 70.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 4.1e-98 362.1 303 66.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 4.1e-98 362.1 278 68.3
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 4.5e-97 358.6 302 65.6
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 4.5e-97 358.6 264 71.6
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 7.7e-97 357.8 245 74.7
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.2e-96 356.3 308 64.3
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.8e-96 355.5 294 66.0
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 6.5e-96 354.8 291 67.7
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 1.1e-95 354.0 232 77.2
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.5e-95 353.6 314 63.7
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.5e-95 353.6 253 72.7
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.9e-95 353.2 245 75.1
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.9e-95 353.2 286 68.2
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.9e-95 353.2 290 67.2
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.5e-95 352.8 244 73.8
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 4.2e-95 352.1 307 65.1
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 7.2e-95 351.3 245 73.9
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 9.4e-95 350.9 289 67.1
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.2e-94 350.5 245 74.3
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-94 349.7 308 64.9
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 2.7e-94 349.4 310 64.5
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.7e-94 348.6 309 63.4
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 4.7e-94 348.6 317 63.1
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 4.7e-94 348.6 291 66.7
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 6.1e-94 348.2 255 71.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 8.0e-94 347.8 300 64.3
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.0e-93 347.4 309 63.1
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.0e-93 345.9 310 63.2
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.0e-93 345.9 243 72.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.0e-93 345.5 277 66.8
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.2e-93 345.1 277 66.8
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.8e-93 344.4 285 65.3
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.2e-92 344.0 235 75.3
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.6e-92 342.8 223 76.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.6e-92 342.8 277 66.4
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 2.6e-92 342.8 291 64.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 1.7e-91 340.1 297 62.0
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.8e-91 339.3 308 61.7
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 4.8e-91 338.6 223 76.2
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 6.3e-91 338.2 281 68.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.4e-90 337.0 292 63.0
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.1e-90 335.9 273 64.8
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.1e-90 335.9 290 64.1
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 3.1e-90 335.9 274 67.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 7.0e-90 334.7 232 72.0
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.1e-90 334.3 295 65.4
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.2e-89 334.0 258 71.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-89 333.6 294 61.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-89 333.6 294 61.6
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.3e-88 330.5 253 69.6
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.2e-88 329.7 293 62.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.9e-88 329.3 231 73.2
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 2.9e-88 329.3 301 64.5
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 1.5e-87 327.0 286 61.9
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.9e-87 326.6 270 65.2
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 3.2e-87 325.9 276 62.7
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.2e-87 325.5 264 68.6
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 5.5e-87 325.1 287 62.4
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 9.5e-87 324.3 266 66.2
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 4.7e-86 322.0 243 69.5
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.0e-84 316.6 279 63.1
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.7e-83 313.5 241 68.0
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 3.7e-83 312.4 216 74.5
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.4e-82 309.7 246 67.9
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.0e-80 304.3 298 57.0
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 5.0e-80 302.0 300 56.3
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-78 297.0 230 69.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.1e-78 296.6 221 70.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.8e-77 293.5 283 60.1
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 4.6e-73 278.9 256 57.8
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.6e-72 275.0 206 68.0
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.1e-70 270.0 278 54.3
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 4.7e-70 268.9 307 52.8
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.8e-69 266.9 230 63.9
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-68 264.2 230 63.5
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 7.5e-68 261.5 201 68.7
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 1.3e-67 260.8 192 71.4
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.2e-67 260.0 259 57.9
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 4.1e-66 255.8 246 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.0e-64 251.1 229 59.0
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.5e-63 247.3 249 55.8
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.3e-63 245.7 218 58.7
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 8.1e-62 241.5 255 58.0
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.0e-60 236.9 274 49.3
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 7.5e-60 235.0 201 65.2
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.3e-59 234.2 164 72.6
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 3.2e-58 229.6 305 50.5
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-58 229.2 206 61.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 2.7e-57 226.5 212 55.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 7.8e-57 224.9 153 77.1
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-55 221.1 189 61.9
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.4e-53 214.2 168 66.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-36 157.5 118 67.8
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.0e-36 157.1 204 44.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.9e-34 150.6 187 48.7
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.6e-33 147.5 217 41.5
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 4.3e-31 139.4 98 72.4
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.7e-27 127.5 228 31.1
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.5e-23 114.4 65 81.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-21 106.7 82 61.0
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.5e-20 104.4 69 72.5
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 8.2e-14 82.0 48 81.2
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.6e-12 77.0 46 80.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.6e-12 77.0 82 58.5
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 6.5e-11 72.4 78 56.4
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 2.1e-09 67.4 49 71.4
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 3.6e-09 66.6 37 86.5
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-08 64.7 71 56.3
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 3.0e-08 63.5 46 73.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.5e-07 61.2 50 56.0


User provided reference genes

Program Settings