Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 0.0e+00 1116.7 603 100.0
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 9.9e-248 860.1 616 80.2
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.1e-245 852.4 617 78.9
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.4e-233 813.1 481 90.6
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.4e-204 716.8 629 67.4
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 4.8e-194 681.8 618 66.7
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 3.5e-192 675.6 613 66.9
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 5.9e-192 674.9 623 66.6
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 7.7e-184 647.9 615 61.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.3e-170 604.0 617 60.5
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.6e-165 587.0 643 58.3
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 2.2e-162 576.6 612 56.5
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 6.1e-88 329.3 625 41.6
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 2.3e-87 327.4 660 40.6
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.4e-81 308.1 674 38.3
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.8e-79 301.2 629 41.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.9e-79 300.1 620 39.0
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.3e-77 295.0 524 41.8
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.7e-77 294.7 646 38.2
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.8e-77 293.1 623 38.2
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.6e-75 287.3 643 39.0
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.0e-74 285.4 622 38.7
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 6.5e-74 282.7 635 38.4
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.2e-73 279.3 637 38.3
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.0e-71 273.9 477 42.1
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.7e-69 268.1 636 36.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 2.8e-69 267.3 631 38.4
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.4e-68 264.2 648 35.5
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 2.7e-67 260.8 547 40.8
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 3.5e-67 260.4 441 43.8
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.3e-66 258.5 400 46.2
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.3e-66 258.5 626 38.0
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-65 255.4 480 42.9
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 4.7e-64 250.0 602 36.0
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.0e-63 248.8 646 35.9
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.0e-63 248.8 623 37.1
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.4e-63 248.4 683 34.7
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.2e-63 246.5 608 35.5
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 2.0e-62 244.6 641 37.1
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 3.4e-62 243.8 626 35.9
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 5.7e-62 243.0 630 36.0
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 4.8e-61 240.0 375 45.3
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 8.3e-61 239.2 635 34.3
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.4e-60 238.4 454 38.8
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 3.1e-60 237.3 489 39.9
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 4.1e-60 236.9 633 36.0
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 9.1e-60 235.7 369 41.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 5.9e-59 233.0 637 35.6
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.2e-57 226.1 585 34.4
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 9.4e-57 225.7 616 36.4
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.1e-56 224.6 414 42.8
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.0e-55 222.2 592 34.8
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.3e-55 221.1 583 34.5
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 5.2e-55 219.9 499 37.9
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 4.4e-54 216.9 491 36.5
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 5.4e-52 209.9 433 40.4
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.7e-50 204.9 397 39.3
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.3e-49 200.7 622 31.7
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 5.6e-49 199.9 323 48.0
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 2.8e-48 197.6 603 34.7
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 8.0e-48 196.1 798 28.1
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.8e-47 194.9 314 44.9
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.8e-47 193.0 635 33.9
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 8.9e-47 192.6 425 40.7
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.0e-46 191.4 561 34.8
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 9.8e-46 189.1 397 37.8
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 1.7e-45 188.3 642 31.2
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 2.9e-45 187.6 630 33.7
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.4e-44 185.3 457 36.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.4e-44 184.5 539 32.8
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 2.4e-44 184.5 561 32.3
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 4.1e-44 183.7 311 45.3
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 7.0e-44 183.0 601 30.9
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.0e-43 181.4 632 34.8
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 4.6e-43 180.3 360 41.9
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.3e-42 178.7 323 42.4
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 2.3e-42 177.9 601 32.1
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 2.3e-42 177.9 601 32.1
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 2.3e-42 177.9 603 31.2
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.0e-42 177.6 581 31.5
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 3.9e-42 177.2 608 30.8
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.5e-41 175.3 616 30.2
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 3.3e-41 174.1 317 41.6
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.3e-41 174.1 344 39.8
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 4.3e-41 173.7 531 35.2
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 5.6e-41 173.3 611 31.3
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 5.6e-41 173.3 553 34.5
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 9.5e-41 172.6 606 32.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 9.5e-41 172.6 606 32.8
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.2e-40 172.2 513 32.2
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 8.0e-40 169.5 316 43.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.0e-39 169.1 603 29.9
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 2.3e-39 167.9 618 31.9
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.5e-38 165.2 375 38.9
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 7.5e-38 162.9 372 38.2
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 4.9e-37 160.2 173 50.3
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.1e-36 159.1 349 37.8
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.3e-34 151.4 505 31.1
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.3e-34 151.4 352 38.9
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.6e-33 146.7 539 29.7
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 7.3e-33 146.4 619 29.7
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 6.2e-32 143.3 633 30.8
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 6.8e-31 139.8 563 29.7
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 2.6e-30 137.9 327 37.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.4e-30 137.5 623 30.2
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 4.4e-30 137.1 496 29.2
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.3e-29 135.6 653 28.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.3e-29 135.6 223 37.7
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.7e-29 135.2 634 31.4
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 5.4e-28 130.2 597 30.5
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 9.2e-28 129.4 287 34.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.0e-26 125.9 530 32.8
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.0e-26 124.4 376 33.2
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 1.5e-25 122.1 89 66.3
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.9e-25 121.7 319 34.5
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 9.5e-25 119.4 505 29.3
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.8e-24 117.9 264 34.8
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 8.1e-24 116.3 374 32.1
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.2e-23 113.6 482 28.0
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 4.1e-20 104.0 364 29.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.2e-19 102.4 498 26.7
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.0e-18 99.4 196 44.9
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 3.9e-18 97.4 151 49.7
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 6.6e-18 96.7 386 28.0
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.5e-17 95.5 305 31.5
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.1e-16 91.7 457 27.1
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.8e-15 88.6 257 34.2
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 6.8e-15 86.7 220 40.9
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 7.1e-12 76.6 171 35.7
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.6e-11 75.5 514 27.6
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 4.6e-11 73.9 330 26.7
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 1.5e-09 68.9 238 28.6
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 1.9e-09 68.6 258 27.5
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 3.3e-09 67.8 75 57.3
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 7.3e-09 66.6 248 28.2
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 2.1e-08 65.1 270 28.1
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.8e-08 64.7 403 25.8
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 4.8e-08 63.9 502 24.5
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 6.2e-08 63.5 269 30.1
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 8.1e-08 63.2 259 32.8
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.1e-07 62.8 348 25.3
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 1.8e-07 62.0 247 28.3
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 1.8e-07 62.0 290 24.1
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.8e-07 62.0 386 24.4
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 3.1e-07 61.2 295 26.4
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 4.0e-07 60.8 259 25.9
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 6.9e-07 60.1 329 26.1
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 9.0e-07 59.7 275 28.7
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 1.2e-06 59.3 271 28.8
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 2.6e-06 58.2 256 24.6
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 2.6e-06 58.2 247 26.3
CSS0003155 Camellia sinensis var. sinensis HOM05D006756 ORTHO05D001869 3.4e-06 57.8 245 26.1
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 3.4e-06 57.8 261 28.0
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 5.8e-06 57.0 260 27.3
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 5.8e-06 57.0 272 29.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 5.8e-06 57.0 42 66.7


User provided reference genes

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