Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.3e-163 580.1 316 100.0
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 2.5e-141 506.9 319 85.0
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 3.7e-129 466.5 308 82.1
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 9.4e-125 451.8 305 82.0
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.7e-122 441.8 316 77.8
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.7e-122 441.8 316 77.8
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 1.4e-115 421.4 318 71.7
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.2e-113 414.1 318 73.9
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.4e-112 411.4 302 72.2
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 3.8e-110 403.3 298 75.2
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 8.5e-110 402.1 298 76.8
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 9.7e-106 388.7 301 70.4
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.2e-103 381.7 305 69.5
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 4.5e-103 379.8 342 63.7
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 7.7e-103 379.0 267 73.8
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 1.7e-102 377.9 340 64.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.9e-102 377.1 278 73.0
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.5e-102 375.6 257 75.9
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.1e-101 375.2 271 73.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.5e-101 374.8 255 76.5
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.9e-101 374.4 271 72.0
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.9e-101 374.4 323 65.0
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 4.2e-101 373.2 263 72.2
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 4.2e-101 373.2 257 75.5
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.1e-100 370.9 257 75.1
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 6.8e-99 365.9 258 73.3
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 6.8e-99 365.9 258 73.3
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.2e-98 365.2 246 75.6
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.5e-98 364.8 282 69.1
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 5.7e-98 362.8 249 77.5
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 9.8e-98 362.1 257 73.5
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.7e-97 361.3 253 74.7
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 6.3e-97 359.4 251 72.9
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 3.1e-96 357.1 258 73.6
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 3.1e-96 357.1 261 71.6
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 4.1e-96 356.7 257 72.0
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 3.5e-95 353.6 261 71.6
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 5.9e-95 352.8 245 73.5
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.3e-94 351.7 251 72.9
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.7e-94 351.3 258 70.9
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 2.3e-94 350.9 262 69.5
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 6.5e-94 349.4 257 68.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.1e-93 348.6 240 77.1
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.1e-93 348.6 262 69.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 3.3e-93 347.1 264 71.6
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 7.2e-93 345.9 258 69.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 7.2e-93 345.9 312 63.8
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 7.2e-93 345.9 325 57.8
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 1.2e-92 345.1 258 68.6
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.1e-92 342.8 240 73.3
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 8.0e-92 342.4 246 72.0
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.4e-91 341.7 255 68.6
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.4e-91 341.7 258 69.8
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.3e-91 340.9 262 66.0
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.3e-91 340.9 235 73.6
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 2.3e-91 340.9 258 68.6
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.3e-91 340.9 280 64.6
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 5.2e-91 339.7 270 66.3
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 5.2e-91 339.7 260 68.5
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.0e-90 337.8 255 67.8
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 7.5e-90 335.9 275 64.4
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.1e-88 332.0 260 66.2
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.4e-88 331.6 259 66.8
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 1.8e-88 331.3 253 68.4
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 4.1e-88 330.1 247 69.6
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.2e-87 328.6 321 57.0
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.6e-87 328.2 248 68.1
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.7e-87 327.4 257 64.6
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.3e-86 325.1 332 56.9
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 3.8e-86 323.6 248 67.7
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 5.0e-86 323.2 246 67.5
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 5.0e-86 323.2 246 67.5
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 5.0e-86 323.2 246 67.5
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 5.0e-86 323.2 238 73.1
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 6.6e-86 322.8 245 68.6
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 6.6e-86 322.8 239 68.6
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 1.5e-85 321.6 234 70.1
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.5e-85 321.6 252 66.3
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 2.5e-85 320.9 245 68.2
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 7.3e-85 319.3 247 66.0
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 7.3e-85 319.3 247 66.0
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.3e-85 319.3 255 64.3
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 7.3e-85 319.3 245 69.4
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 9.5e-85 318.9 252 65.1
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.8e-84 317.4 244 68.0
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 2.8e-84 317.4 242 67.8
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 3.6e-84 317.0 242 67.8
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.8e-83 314.7 238 68.9
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.5e-82 311.6 237 67.1
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 6.4e-81 306.2 258 62.4
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.8e-80 304.7 256 62.5
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.0e-78 297.4 245 64.1
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.5e-77 295.0 272 58.5
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.5e-77 294.3 273 60.1
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 7.3e-77 292.7 289 56.4
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 1.2e-74 285.4 262 60.3
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.8e-74 283.1 242 62.0
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.5e-71 273.9 256 57.0
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 1.4e-67 261.9 170 78.2
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 3.1e-59 234.2 169 75.7
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 3.5e-55 220.7 146 71.9
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.1e-47 194.9 269 43.1
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 7.8e-47 193.0 247 49.4
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 4.2e-40 170.6 212 43.9
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.4e-32 145.6 220 38.2
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.3e-30 139.0 249 36.9
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 2.3e-30 138.3 183 44.8
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 3.4e-26 124.4 252 36.5
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 3.0e-22 111.3 172 36.0
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 3.3e-21 107.8 171 33.3
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.0e-17 96.3 88 56.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 5.0e-09 67.4 227 26.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 9.4e-08 63.2 106 32.1
CBR_g20311 Chara braunii HOM05D007251 ORTHO05D009266 2.7e-07 61.6 208 25.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.7e-07 61.6 94 31.9
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.7e-07 61.6 94 31.9
QL03p001061 Quercus lobata HOM05D000001 ORTHO05D000003 2.7e-07 61.6 152 28.9
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 6.1e-07 60.5 104 32.7
Actinidia26891 Actinidia chinensis HOM05D000001 ORTHO05D009952 3.0e-06 58.2 113 29.2


User provided reference genes

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