Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.8e-268 929.1 630 100.0
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.1e-239 831.2 676 82.5
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 8.8e-223 777.3 635 89.8
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 8.3e-213 744.2 529 81.7
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 3.8e-210 735.3 541 90.6
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 6.6e-202 708.0 526 81.2
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 4.2e-201 705.3 526 81.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.0e-198 696.4 633 79.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-198 695.7 631 76.2
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 2.8e-192 676.0 525 77.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 6.2e-192 674.9 639 70.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 8.9e-191 671.0 630 77.6
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 5.8e-190 668.3 526 78.5
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.3e-189 667.2 493 82.2
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.3e-189 667.2 437 81.5
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.7e-187 659.4 645 70.1
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.6e-184 650.2 527 75.5
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.2e-181 639.8 508 74.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.9e-181 638.6 526 73.8
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 7.1e-180 634.8 523 71.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 2.1e-179 633.3 518 71.8
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 2.7e-179 632.9 632 76.1
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 4.6e-179 632.1 634 74.6
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.3e-178 629.8 649 65.6
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 5.1e-178 628.6 434 78.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.9e-177 626.7 502 74.9
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.8e-176 622.9 632 75.6
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.8e-175 620.2 526 73.2
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.8e-175 620.2 513 71.2
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-175 619.8 526 73.4
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.3e-175 619.8 633 70.8
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 5.2e-175 618.6 631 66.4
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.6e-174 616.3 526 72.8
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 3.2e-172 609.4 526 71.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.2e-171 607.4 644 63.4
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.0e-170 602.8 506 74.1
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 3.0e-170 602.8 524 74.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 3.9e-170 602.4 573 65.6
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 8.6e-170 601.3 524 65.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 8.6e-170 601.3 524 64.9
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.1e-169 600.9 638 66.5
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.2e-168 597.4 527 67.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.2e-168 597.4 524 64.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.1e-168 596.7 524 65.3
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.0e-167 592.4 524 69.7
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.5e-166 590.5 628 68.6
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.5e-166 590.5 522 67.0
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 2.6e-166 589.7 491 72.7
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.2e-165 586.6 635 65.0
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 3.8e-165 585.9 525 68.8
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.2e-163 580.9 638 69.3
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.6e-163 580.5 530 68.5
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.0e-162 577.8 527 64.5
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.0e-162 576.2 527 69.4
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.1e-161 574.3 643 63.9
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.1e-161 574.3 574 64.1
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 9.6e-161 571.2 538 72.7
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.6e-160 570.5 395 77.7
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.6e-160 569.3 523 68.3
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.2e-158 564.3 638 68.7
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.6e-158 563.1 485 65.4
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 4.4e-158 562.4 524 67.7
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.2e-157 560.1 527 62.6
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.9e-157 559.7 524 67.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.4e-156 557.4 437 69.8
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.9e-156 557.0 635 59.1
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 9.3e-156 554.7 528 61.0
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 4.6e-155 552.4 525 68.6
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 6.6e-154 548.5 433 72.5
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 8.7e-154 548.1 640 65.2
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.1e-153 547.7 524 62.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 3.3e-153 546.2 630 66.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-152 544.3 428 72.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 8.1e-152 541.6 452 67.7
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.8e-151 540.4 532 62.4
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-151 540.0 420 71.2
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 2.0e-150 537.0 525 67.4
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-146 524.2 644 55.7
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.0e-146 523.1 505 68.5
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.5e-145 520.0 636 58.5
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 7.4e-145 518.5 532 59.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 8.1e-144 515.0 435 66.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.0e-142 510.4 447 64.2
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.9e-137 493.8 445 62.5
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 9.6e-137 491.5 534 55.1
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.8e-135 487.3 525 61.7
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.0e-134 483.8 697 55.8
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.2e-133 480.3 371 78.7
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 6.5e-133 478.8 451 60.8
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 5.7e-129 465.7 351 72.4
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 2.2e-128 463.8 550 59.6
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 6.3e-128 462.2 531 61.2
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.6e-126 456.8 441 60.3
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 6.5e-125 452.2 454 58.4
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 4.6e-123 446.0 529 60.7
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 7.9e-123 445.3 428 60.5
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.7e-121 439.1 533 59.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 9.7e-121 438.3 529 58.8
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.1e-119 434.9 525 59.6
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-119 434.1 520 59.6
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 5.3e-119 432.6 520 60.0
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 5.3e-119 432.6 522 59.8
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.2e-117 427.2 527 58.3
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.9e-117 426.8 513 52.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.5e-116 423.7 475 60.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 4.2e-116 422.9 429 57.8
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.0e-114 416.8 530 57.7
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.7e-109 401.0 376 59.6
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.1e-107 394.0 529 56.3
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.7e-102 375.6 336 62.5
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.3e-98 364.0 314 76.4
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 7.5e-97 359.0 362 54.7
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.5e-94 350.1 330 59.1
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-92 344.7 260 71.5
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-92 344.7 260 71.5
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-92 344.4 260 71.5
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-92 344.4 260 71.5
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 5.2e-90 336.3 417 49.4
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 7.5e-89 332.4 327 56.6
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.0e-82 312.0 446 51.1
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.9e-80 303.9 383 50.1
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 1.9e-71 274.6 513 40.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.0e-69 267.3 303 51.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.2e-65 255.4 518 39.0
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.4e-63 248.4 170 78.2
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 4.0e-58 230.3 386 43.0
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.2e-58 229.9 269 65.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 7.6e-57 226.1 298 47.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.4e-49 200.7 513 38.2
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 8.7e-45 186.0 134 73.9
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 7.6e-41 172.9 103 81.6
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 6.7e-37 159.8 152 63.8
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.4e-36 156.4 226 46.9
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 5.8e-33 146.7 156 57.7
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.1e-28 132.5 306 35.6
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 2.5e-28 131.3 359 33.7
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.1e-27 126.3 234 38.9
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.5e-20 104.8 319 27.9
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.1e-19 101.7 88 55.7
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.7e-19 100.9 61 82.0
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 8.5e-16 89.7 52 80.8
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 5.5e-15 87.0 219 62.1
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.1e-12 79.3 137 58.4
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.2e-11 75.1 41 82.9
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 9.1e-10 69.7 41 82.9


User provided reference genes

Program Settings