Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 3.9e-311 1070.8 632 100.0
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 8.5e-218 760.8 626 68.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.8e-192 676.0 625 61.4
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.9e-185 653.3 585 63.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.1e-180 637.5 609 59.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 4.1e-180 635.6 531 63.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 4.4e-174 615.5 572 61.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.9e-170 602.4 560 60.4
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.3e-169 599.0 581 57.1
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.5e-166 590.5 539 60.5
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.1e-161 574.3 560 54.3
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.6e-142 510.0 566 52.1
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.6e-139 500.7 549 56.6
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.8e-138 497.3 566 48.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.9e-138 496.1 595 50.4
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 8.8e-138 495.0 554 51.4
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 5.7e-137 492.3 590 49.5
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 2.2e-136 490.3 566 48.9
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.5e-134 484.2 560 48.4
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.0e-134 483.8 548 52.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 4.5e-134 482.6 569 49.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-133 481.1 551 49.7
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.2e-133 480.3 544 51.1
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.0e-133 479.2 548 49.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 6.5e-133 478.8 542 45.8
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-132 477.6 542 46.3
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.4e-132 477.6 544 50.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.2e-132 476.5 542 46.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.2e-132 476.5 542 46.3
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.2e-132 476.1 556 47.1
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 9.4e-132 474.9 581 45.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 2.1e-131 473.8 575 47.8
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.7e-131 473.4 542 46.1
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 4.7e-131 472.6 566 50.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 6.1e-131 472.2 569 48.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 7.9e-131 471.9 577 48.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.0e-130 469.9 607 44.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.1e-130 469.2 529 46.9
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.3e-129 466.5 553 46.8
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 9.7e-129 464.9 552 47.3
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.3e-128 462.2 566 47.3
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.2e-124 449.5 531 47.3
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.1e-121 441.4 531 45.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.5e-121 441.0 549 47.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.6e-121 440.3 574 46.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 7.4e-121 438.7 552 46.2
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.4e-119 433.7 571 46.4
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.8e-117 426.4 575 45.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.1e-116 424.9 537 47.5
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.2e-116 422.2 535 47.7
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.7e-115 420.2 512 43.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 4.7e-115 419.5 565 43.7
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.1e-115 419.1 527 43.8
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.5e-113 414.5 578 45.0
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.5e-113 414.5 554 46.8
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.0e-113 414.1 595 43.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.4e-113 412.9 569 46.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 7.5e-113 412.1 581 45.3
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.3e-112 411.4 518 43.4
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 6.3e-112 409.1 515 43.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 7.0e-111 405.6 575 44.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.5e-110 403.3 595 42.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 7.2e-108 395.6 568 43.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 7.2e-108 395.6 513 42.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 9.4e-108 395.2 541 44.7
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 9.4e-108 395.2 550 43.6
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-107 394.4 561 39.6
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 4.7e-107 392.9 568 43.3
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.5e-105 387.9 548 44.3
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 4.5e-102 376.3 566 43.6
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.5e-100 371.3 545 41.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.7e-99 366.3 517 43.7
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.3e-98 364.0 418 55.3
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 4.4e-97 359.8 340 56.2
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.8e-95 354.4 554 39.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.1e-95 353.6 467 46.5
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-91 341.3 532 37.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.8e-91 340.5 421 48.5
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 8.0e-91 339.0 495 39.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 5.8e-89 332.8 544 40.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.7e-88 331.3 538 40.1
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.1e-87 326.6 549 40.3
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 4.6e-86 323.2 341 50.7
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.0e-85 322.0 485 37.9
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 3.9e-85 320.1 339 48.7
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.1e-84 318.5 341 49.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.6e-83 314.7 551 33.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.1e-83 314.3 379 51.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 3.1e-82 310.5 488 40.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 8.9e-82 308.9 341 47.2
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.1e-75 287.7 457 41.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.1e-74 283.9 518 35.7
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.4e-72 276.2 517 34.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.1e-71 275.4 245 58.4
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.1e-71 275.4 519 34.1
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.3e-69 268.5 345 44.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.0e-66 256.9 511 32.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 9.2e-63 245.7 312 46.5
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.1e-61 240.0 307 43.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 7.3e-60 236.1 249 49.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.4e-55 221.1 343 45.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 6.0e-54 216.5 358 36.9
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.0e-53 215.7 443 31.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.6e-53 213.0 253 45.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.6e-49 199.5 646 26.3
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.1e-42 179.1 149 57.0
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.0e-42 176.0 137 62.8
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 7.6e-41 172.9 101 82.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-38 165.2 144 56.2
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.9e-36 158.3 144 51.4
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 6.9e-34 149.8 145 53.1
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.0e-34 149.4 134 53.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.4e-33 147.5 288 34.4
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.6e-33 146.4 124 54.0
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.0e-32 146.0 164 52.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.9e-32 144.4 109 60.6
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.0e-30 136.7 128 50.8
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.0e-29 136.0 147 45.6
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.8e-29 135.2 151 54.3
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.8e-29 135.2 88 63.6
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.0e-29 134.4 109 54.1
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 7.7e-25 119.8 87 62.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.0e-24 117.1 146 45.9
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 7.2e-23 113.2 127 44.9
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 7.9e-22 109.8 92 50.0
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 3.0e-21 107.8 62 93.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 2.0e-20 105.1 59 94.9
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.5e-20 104.8 82 51.2
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 9.7e-20 102.8 117 45.3
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 6.3e-19 100.1 103 46.6
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 6.3e-19 100.1 92 53.3
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.8e-18 98.6 85 51.8
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.0e-17 95.1 81 46.9
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 7.7e-17 93.2 403 27.8
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-16 92.0 131 35.1
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-15 88.6 96 40.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-13 82.4 77 44.2
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.8e-13 82.0 86 44.2
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 6.7e-13 80.1 87 37.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.6e-12 78.2 78 44.9
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.7e-12 77.0 76 43.4
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.8e-11 74.7 47 72.3
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 79 43.0
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 79 43.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 6.3e-11 73.6 91 44.0
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.4e-10 72.4 42 76.2
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.1e-10 70.9 66 48.5
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 9.1e-10 69.7 54 64.8
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-09 69.3 57 56.1
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.6e-09 68.2 64 40.6
arahy.Tifrunner.gnm1.ann1.K7C7WR Arachis hypogaea HOM05D000552 ORTHO05D005700 4.5e-09 67.4 48 72.9
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 7.7e-09 66.6 75 46.7
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.9e-08 64.7 112 29.5


User provided reference genes

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