Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 0.0e+00 1193.3 645 100.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 5.9e-291 1003.8 648 85.5
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.5e-257 892.1 650 76.2
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.8e-238 827.8 647 72.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.8e-232 808.9 654 70.8
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.8e-231 806.2 660 70.6
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.2e-230 803.5 660 70.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 4.6e-227 791.6 660 69.5
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.7e-226 787.3 661 70.5
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.7e-226 787.3 660 69.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.4e-223 779.2 660 68.8
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-222 776.5 660 68.5
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.3e-216 754.6 660 68.6
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-214 750.4 661 69.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.1e-212 743.8 661 67.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 5.5e-212 741.5 658 66.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 9.3e-212 740.7 663 66.7
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 6.1e-211 738.0 662 67.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.9e-209 733.0 663 64.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.6e-208 729.9 662 66.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 3.7e-208 728.8 661 66.6
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 5.5e-204 714.9 664 63.9
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 6.7e-202 708.0 661 65.1
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 6.7e-202 708.0 661 65.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 9.7e-201 704.1 660 65.8
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.7e-200 703.4 664 63.4
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.4e-199 700.3 667 64.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.8e-199 699.9 665 64.8
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 5.3e-199 698.4 674 62.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 5.3e-199 698.4 660 62.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 9.1e-199 697.6 662 63.3
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.4e-198 695.7 664 64.5
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.7e-197 693.3 662 63.6
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.9e-197 692.6 649 65.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.4e-196 690.3 663 62.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.5e-196 688.3 667 63.0
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.2e-195 687.2 664 62.2
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.6e-195 686.8 663 63.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.6e-195 685.6 652 65.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.9e-195 684.5 663 62.3
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-194 684.1 656 66.0
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.3e-194 682.9 659 62.2
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.6e-193 679.5 663 62.0
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.7e-193 677.6 663 61.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-192 676.8 543 71.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-192 676.8 543 71.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.8e-192 676.0 663 61.8
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.3e-192 674.9 659 62.2
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 8.2e-192 674.5 663 61.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.5e-190 668.7 660 61.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.5e-188 662.9 664 61.7
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 8.0e-187 657.9 659 60.8
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.4e-186 657.1 667 60.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.4e-186 657.1 663 59.9
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.3e-186 656.4 660 60.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.0e-186 656.0 637 63.9
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.0e-186 656.0 653 60.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-185 654.1 668 60.0
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.5e-185 653.7 657 61.3
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.3e-185 652.5 658 60.0
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 8.2e-184 647.9 661 60.2
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.3e-183 645.2 670 61.0
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.2e-182 644.0 675 60.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.0e-182 643.3 656 60.1
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.0e-182 643.3 662 60.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 5.9e-182 641.7 656 59.8
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 5.9e-182 641.7 666 59.3
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.3e-181 640.6 645 60.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 6.5e-181 638.3 648 60.0
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 7.2e-180 634.8 655 59.1
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.1e-179 633.3 656 59.1
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.0e-178 629.4 656 58.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 6.8e-178 628.2 667 57.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 6.8e-178 628.2 667 57.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-177 626.7 657 60.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.0e-177 626.7 658 58.7
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 4.4e-177 625.5 656 60.2
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 5.7e-177 625.2 652 58.9
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.7e-177 625.2 667 56.8
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.7e-177 625.2 606 61.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.8e-177 624.4 664 58.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-176 623.6 660 58.2
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.7e-176 623.6 660 58.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.8e-176 622.1 666 56.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.4e-175 619.8 673 58.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.1e-175 619.0 657 60.4
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.1e-175 617.8 667 56.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 3.5e-174 615.9 657 57.5
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.0e-173 614.4 665 60.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.9e-172 610.1 657 59.5
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.5e-172 609.8 663 57.8
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.2e-172 609.0 661 57.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.0e-170 604.4 656 58.7
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-170 604.0 662 57.6
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.8e-170 603.6 657 59.2
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 3.0e-170 602.8 615 60.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.6e-169 599.7 656 58.7
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.4e-169 599.4 656 58.5
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 9.8e-169 597.8 662 57.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.7e-168 597.0 660 56.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 6.3e-168 595.1 660 57.3
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.5e-166 589.3 614 59.4
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 5.9e-166 588.6 611 58.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.7e-165 587.0 664 55.9
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.9e-165 586.3 668 56.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.5e-164 583.9 654 55.2
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.7e-163 578.9 539 64.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-163 578.6 666 53.8
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 8.0e-163 578.2 658 55.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.0e-162 577.8 662 57.4
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.0e-162 575.9 656 56.6
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 8.9e-162 574.7 670 54.2
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.4e-161 572.8 668 53.3
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.7e-160 570.5 657 56.2
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 7.0e-159 565.1 654 54.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.8e-158 561.6 659 55.5
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.0e-157 561.2 660 53.3
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-156 557.8 663 52.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 7.3e-156 555.1 662 51.8
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.1e-155 553.5 663 52.6
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.8e-154 550.4 661 53.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.1e-154 549.7 661 54.3
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.2e-153 547.7 677 54.5
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.5e-153 547.4 660 53.3
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 5.4e-151 538.9 660 53.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.5e-150 536.2 660 53.0
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-147 527.3 668 52.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-147 526.6 658 53.0
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.1e-146 523.1 658 52.6
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-146 522.7 662 52.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-144 517.3 688 48.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.7e-144 517.3 663 54.0
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.9e-143 513.8 671 49.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 4.1e-143 512.7 656 51.2
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.2e-142 511.1 653 50.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-142 510.8 666 50.9
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-138 498.0 650 52.8
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.8e-138 497.3 680 48.4
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 4.0e-138 496.1 680 47.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.4e-137 492.7 665 48.4
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 4.4e-137 492.7 632 50.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.3e-136 491.1 669 49.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-131 474.6 661 49.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.7e-128 464.2 663 46.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.2e-128 463.8 645 50.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.7e-125 454.1 661 46.7
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 7.3e-124 448.7 543 53.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.1e-123 447.2 401 66.1
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.6e-115 421.0 624 45.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.0e-114 415.2 613 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.5e-113 414.5 663 43.1
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.8e-106 391.0 423 59.3
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 5.5e-103 379.4 399 58.9
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.5e-100 370.5 404 59.7
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 5.9e-97 359.4 655 42.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.4e-90 337.4 685 39.1
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 5.2e-77 293.1 536 40.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.4e-76 290.0 554 39.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 4.1e-74 283.5 308 56.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.3e-68 263.8 230 65.7
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 8.2e-67 259.2 392 44.4
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 7.7e-57 226.1 640 35.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 9.8e-52 209.1 273 45.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 4.5e-49 200.3 632 30.4
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.4e-34 150.2 115 64.3
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.8e-28 130.2 220 46.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 6.6e-24 116.7 77 74.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.8e-21 108.6 106 52.8
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.5e-20 105.5 152 48.7
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.1e-17 95.1 131 42.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.7e-17 94.7 80 65.0
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-16 92.4 78 65.4
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.0e-16 91.3 58 69.0
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.6e-14 84.3 74 59.5
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 6.2e-14 83.6 128 47.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 6.4e-11 73.6 597 23.3
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.4e-10 72.4 46 71.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.1e-09 68.6 403 23.3
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 6.6e-08 63.5 170 40.6


User provided reference genes

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