Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 9.0e-136 486.9 239 100.0
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.3e-107 392.5 261 76.2
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 9.7e-106 387.1 261 76.2
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.4e-99 366.7 261 73.6
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.7e-95 352.4 261 70.1
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 7.2e-93 344.4 261 68.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.2e-92 343.6 268 67.2
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.6e-92 342.0 261 69.7
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.4e-88 330.1 258 65.9
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.4e-88 329.3 258 65.1
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 4.1e-88 328.6 259 66.8
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.8e-84 315.8 226 71.7
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.4e-73 278.1 256 57.8
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.6e-71 273.5 256 57.4
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.0e-71 273.1 274 55.1
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 3.5e-71 272.3 276 55.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 4.6e-71 271.9 274 53.6
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 7.8e-71 271.2 294 53.1
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 8.6e-70 267.7 274 52.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.5e-69 266.9 278 53.6
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.5e-69 266.9 263 55.9
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.5e-69 266.2 269 55.8
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 9.5e-69 264.2 237 59.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.2e-68 261.5 258 55.0
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.2e-68 261.5 258 55.0
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 6.2e-68 261.5 283 51.2
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.8e-67 260.0 258 55.4
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.9e-67 257.7 293 49.5
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.5e-66 256.9 258 54.3
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.9e-65 252.7 277 51.6
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 6.4e-65 251.5 278 51.1
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 9.2e-64 247.7 284 51.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.6e-63 246.9 274 50.7
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 2.0e-63 246.5 276 50.7
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.7e-63 246.1 260 52.3
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.5e-63 245.7 276 48.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 7.8e-63 244.6 309 46.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-62 244.2 278 51.4
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.0e-62 244.2 273 50.5
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.7e-62 243.4 242 56.2
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.3e-62 243.0 262 50.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.0e-62 242.7 277 49.5
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 3.0e-62 242.7 277 50.2
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 6.6e-62 241.5 258 52.7
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 8.6e-62 241.1 271 49.8
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.9e-61 240.0 258 52.3
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.5e-61 239.6 279 50.9
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 3.3e-61 239.2 281 50.2
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.3e-61 239.2 261 52.9
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 4.3e-61 238.8 276 49.6
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 4.3e-61 238.8 275 48.4
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.2e-60 237.3 271 50.6
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.2e-60 237.3 270 48.1
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.1e-60 236.5 276 49.6
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.8e-60 236.1 279 49.1
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.8e-60 236.1 258 51.6
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 3.6e-60 235.7 278 47.5
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 6.2e-60 235.0 274 48.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 8.1e-60 234.6 277 47.7
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.4e-59 233.8 274 47.4
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.8e-59 233.4 275 48.0
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.3e-59 233.0 278 47.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 5.2e-59 231.9 288 49.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.2e-59 231.9 184 61.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.8e-59 231.5 271 47.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.5e-58 230.3 281 46.6
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.0e-58 229.9 284 48.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.6e-58 229.6 241 53.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.6e-58 229.6 281 48.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.4e-58 229.2 184 61.4
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 7.5e-58 228.0 265 49.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 7.5e-58 228.0 155 78.1
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 9.9e-58 227.6 239 53.6
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 2.2e-57 226.5 188 60.1
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 2.2e-57 226.5 272 47.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 2.2e-57 226.5 258 51.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 3.7e-57 225.7 272 47.8
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.9e-57 225.3 274 47.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.9e-57 225.3 275 46.5
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 8.3e-57 224.6 275 46.2
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.4e-56 223.0 331 42.6
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.1e-56 222.2 262 51.9
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 3.5e-55 219.2 296 45.6
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.3e-53 212.6 276 46.7
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.3e-53 212.6 278 45.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 7.3e-53 211.5 252 49.2
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 6.2e-52 208.4 246 49.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 9.9e-50 201.1 199 54.8
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 3.8e-49 199.1 214 51.9
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.1e-48 197.6 213 52.6
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 5.4e-48 195.3 218 48.6
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.6e-47 193.7 219 49.3
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.0e-47 191.8 153 59.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 2.5e-45 186.4 222 46.4
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.6e-45 184.5 185 51.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 6.2e-44 181.8 263 41.8
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 4.0e-43 179.1 193 49.2
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 5.2e-43 178.7 213 48.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.0e-43 177.9 196 51.5
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 5.4e-40 168.7 173 52.6
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.0e-38 164.5 216 47.7
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.3e-38 163.3 234 40.6
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.6e-38 161.8 243 41.6
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.3e-37 159.5 258 41.5
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.9e-35 151.8 133 56.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 3.4e-34 149.4 123 59.3
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.2e-33 146.7 243 37.9
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 8.4e-33 144.8 154 54.5
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 3.5e-31 139.4 128 53.9
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-30 137.9 108 57.4
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 6.2e-28 128.6 205 39.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 5.8e-26 122.1 170 45.9
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 9.9e-26 121.3 251 34.3
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 6.4e-25 118.6 278 30.9
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 7.4e-21 105.1 102 50.0
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.5e-18 97.4 84 52.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.5e-18 97.4 157 38.2
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 5.8e-18 95.5 234 34.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.9e-17 92.4 136 36.8
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 7.9e-15 85.1 88 56.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 5.1e-14 82.4 144 39.6
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.3e-13 79.7 46 73.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 4.3e-13 79.3 185 32.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-11 74.3 113 45.1
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.7e-07 60.1 132 37.9
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 5.1e-06 55.8 61 47.5


User provided reference genes

Program Settings