Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 4.1e-195 684.5 330 100.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.1e-147 526.9 325 81.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 5.2e-142 508.1 316 79.4
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 8.9e-142 507.3 332 76.2
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-139 500.4 329 75.1
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-139 500.4 329 75.1
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.4e-139 499.2 332 73.5
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 2.1e-138 496.1 296 80.7
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.1e-137 491.5 300 77.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 2.3e-129 466.1 249 86.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 5.2e-126 454.9 249 86.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 7.8e-122 441.0 320 64.7
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.3e-121 440.3 321 64.5
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.9e-121 438.7 314 65.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.1e-118 430.6 305 65.2
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 4.0e-118 428.7 320 64.7
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.3e-118 428.3 321 62.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.0e-117 426.4 319 63.3
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 5.8e-117 424.9 310 63.5
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.3e-116 423.7 281 69.0
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.4e-115 419.5 321 61.4
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 4.2e-115 418.7 281 69.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 5.4e-115 418.3 317 63.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.7e-114 416.0 280 67.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.6e-114 415.2 284 67.6
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.3e-113 413.7 320 62.2
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.3e-113 413.7 308 64.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.7e-113 413.3 325 61.2
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.0e-113 412.5 321 61.4
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.0e-113 412.5 292 65.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.0e-113 412.5 335 59.1
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 8.7e-113 411.0 323 60.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.5e-112 410.2 292 65.8
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.9e-112 409.8 284 67.3
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.3e-112 409.1 292 65.1
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.3e-112 409.1 321 62.3
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.3e-112 409.1 279 66.3
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.6e-112 408.3 281 66.9
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.6e-111 405.6 276 75.4
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.1e-110 404.1 280 67.1
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.4e-110 402.9 329 58.7
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.6e-109 397.9 312 61.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.3e-108 397.1 282 64.9
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.3e-108 397.1 304 60.5
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.7e-108 396.7 312 61.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.2e-108 396.4 313 60.7
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 3.8e-108 395.6 318 59.4
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 4.9e-108 395.2 282 64.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-106 390.2 323 61.6
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.7e-106 389.4 289 65.1
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 7.9e-106 387.9 282 64.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.0e-105 387.5 299 60.2
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.9e-105 385.6 320 58.1
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.7e-105 384.8 323 57.3
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.1e-104 384.0 335 56.4
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.9e-104 383.3 299 59.5
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.8e-103 379.4 282 61.3
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 8.1e-103 377.9 245 69.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.0e-102 375.6 320 57.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 9.0e-102 374.4 291 61.2
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 5.8e-101 371.7 304 55.9
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 8.4e-100 367.9 249 67.9
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.1e-99 367.5 246 68.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.1e-99 364.8 291 59.1
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 7.1e-99 364.8 324 53.7
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 9.3e-99 364.4 322 54.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.5e-98 362.5 323 54.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.8e-97 360.1 325 54.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.8e-97 360.1 321 54.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.8e-97 360.1 255 65.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.3e-97 359.8 323 53.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-97 359.8 321 54.5
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.9e-97 359.0 325 53.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 8.7e-97 357.8 281 58.4
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-96 357.5 297 56.6
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-96 357.5 297 56.2
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.3e-96 355.5 324 53.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 5.7e-96 355.1 323 53.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.3e-95 354.0 281 57.7
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.3e-95 354.0 255 63.1
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.1e-95 353.2 249 64.3
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 9.0e-94 347.8 315 54.9
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.4e-93 345.9 320 54.1
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.8e-93 345.1 277 66.4
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.0e-92 344.4 256 60.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.2e-92 343.2 314 54.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.9e-92 342.8 217 69.1
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.9e-91 340.1 282 56.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-88 330.5 302 54.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 7.4e-88 328.2 274 56.9
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.1e-86 324.3 306 51.6
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.7e-82 309.7 282 54.3
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.6e-82 309.3 281 52.0
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 5.7e-80 302.0 250 60.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 2.6e-77 293.1 284 52.8
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.8e-76 289.3 323 48.0
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 5.0e-76 288.9 194 66.0
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.4e-75 287.3 558 33.2
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-74 283.9 187 67.4
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.9e-74 281.6 280 45.7
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.4e-73 280.8 329 45.3
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-71 273.9 189 63.5
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.8e-71 273.1 278 45.7
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.9e-68 263.1 149 79.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.5e-67 260.8 299 41.1
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.7e-66 256.5 161 70.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.0e-65 254.6 278 43.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.9e-61 238.8 153 66.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 8.5e-60 235.0 153 66.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-49 201.1 174 55.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.4e-49 201.1 165 60.6
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.3e-49 200.3 239 46.9
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.2e-49 199.1 239 46.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-47 194.5 166 59.0
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.9e-44 183.3 157 58.6
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.6e-40 170.2 215 34.4
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.7e-39 166.4 228 44.7
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.3e-39 165.6 200 45.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.1e-38 164.9 127 55.9
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.3e-36 157.9 152 54.6
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.7e-36 157.5 275 34.2
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.7e-36 157.5 100 75.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-35 154.5 100 74.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.0e-33 148.3 112 60.7
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 8.3e-31 138.7 144 52.1
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.5e-29 133.3 128 53.1
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 2.3e-28 130.6 100 70.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.5e-24 117.9 73 67.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.6e-18 97.8 75 54.7
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 4.1e-14 83.2 75 58.7
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.6e-13 79.7 67 59.7
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.3e-12 77.4 78 51.3
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 7.3e-11 72.4 89 49.4


User provided reference genes

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