Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 1.8e-190 669.1 330 100.0
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 3.2e-184 648.3 331 97.3
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 1.8e-174 615.9 332 90.7
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 2.6e-173 612.1 332 90.7
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 5.9e-154 547.7 325 82.8
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 3.3e-152 542.0 334 81.4
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 3.1e-150 535.4 337 78.9
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 2.3e-145 519.2 331 78.2
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 3.1e-142 508.8 312 79.8
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 3.4e-141 505.4 312 79.8
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 3.4e-141 505.4 341 75.7
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 7.5e-141 504.2 310 80.0
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 2.2e-140 502.7 342 74.6
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 3.7e-140 501.9 332 75.9
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 4.9e-140 501.5 332 75.6
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 6.4e-140 501.1 325 76.0
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 6.4e-140 501.1 312 78.2
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.1e-139 500.4 340 73.8
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.1e-139 500.4 325 76.9
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 4.1e-139 498.4 325 76.6
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 1.6e-138 496.5 305 79.3
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 2.1e-138 496.1 333 73.3
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 4.6e-138 495.0 320 76.6
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 6.0e-138 494.6 325 76.3
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 3.9e-137 491.9 335 74.0
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 6.6e-137 491.1 331 74.3
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 2.5e-136 489.2 331 72.8
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 1.2e-135 486.9 326 75.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 8.1e-135 484.2 330 73.9
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 1.4e-134 483.4 306 76.5
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 3.1e-134 482.3 326 73.6
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 8.9e-134 480.7 330 73.0
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 8.9e-134 480.7 328 72.0
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 1.2e-133 480.3 326 73.9
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 1.5e-133 479.9 329 73.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 2.0e-133 479.6 329 72.6
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 3.7e-132 475.3 300 77.3
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 4.9e-132 474.9 330 72.7
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 6.4e-132 474.6 333 71.5
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 8.3e-132 474.2 339 74.9
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 8.3e-132 474.2 338 75.1
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 9.2e-131 470.7 332 69.9
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 3.5e-130 468.8 334 69.8
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 3.5e-130 468.8 334 69.8
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 7.8e-130 467.6 344 70.6
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 7.8e-130 467.6 314 73.2
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.0e-129 467.2 331 70.7
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.0e-129 467.2 313 73.5
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 1.7e-129 466.5 338 69.8
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 3.9e-129 465.3 323 72.1
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 6.6e-129 464.5 314 72.0
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.2e-127 460.3 314 72.3
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 2.1e-127 459.5 312 72.4
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 2.8e-127 459.1 333 70.3
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 3.6e-127 458.8 313 72.2
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 4.7e-127 458.4 330 69.1
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 8.1e-127 457.6 323 70.6
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.4e-126 456.8 334 68.3
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 1.8e-126 456.4 342 67.3
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 5.2e-126 454.9 351 66.1
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 8.9e-126 454.1 332 68.1
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 2.0e-125 453.0 330 67.9
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 5.8e-125 451.4 331 68.6
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.7e-124 449.9 328 69.8
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 3.8e-124 448.7 318 70.1
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 3.2e-123 445.7 328 67.7
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 7.1e-123 444.5 272 77.2
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 1.2e-122 443.7 326 68.1
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.6e-122 443.4 327 67.3
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 3.5e-122 442.2 303 71.3
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 3.5e-122 442.2 303 71.3
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 2.3e-121 439.5 258 79.8
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 3.9e-121 438.7 337 66.2
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 5.1e-121 438.3 326 68.7
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 1.5e-120 436.8 308 69.2
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 1.5e-120 436.8 303 70.3
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 1.5e-120 436.8 303 70.3
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 1.9e-120 436.4 303 70.3
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 1.9e-120 436.4 305 69.8
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 5.6e-120 434.9 332 66.6
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 3.6e-119 432.2 303 69.6
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 3.6e-119 432.2 328 67.7
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 1.8e-118 429.9 311 70.1
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 1.8e-118 429.9 238 84.5
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 2.4e-118 429.5 305 69.8
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 2.0e-117 426.4 312 68.6
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.4e-117 425.6 297 69.0
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 7.6e-117 424.5 232 87.5
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 2.9e-116 422.5 310 68.1
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.1e-115 420.6 284 71.1
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.4e-115 420.2 305 67.9
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 6.0e-114 414.8 328 64.6
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.4e-110 403.7 236 79.7
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.7e-108 396.7 271 70.1
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 6.4e-108 394.8 216 84.3
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.5e-106 389.0 286 67.8
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 3.5e-106 389.0 336 61.6
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 2.0e-101 373.2 243 77.4
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 2.9e-100 369.4 307 61.2
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.5e-96 356.3 328 58.5
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 9.0e-94 347.8 323 55.1
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 5.5e-91 338.6 258 61.2
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 7.9e-90 334.7 184 85.9
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 7.9e-90 334.7 184 85.9
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 9.4e-83 311.2 310 50.6
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 2.2e-79 300.1 196 75.0
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.8e-70 270.4 201 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 2.6e-69 266.5 189 64.6
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 3.3e-64 249.6 149 81.2
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 2.1e-58 230.3 201 57.7
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.1e-42 177.2 198 46.5
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 6.6e-36 155.6 78 93.6
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.1e-30 138.3 145 51.7
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 5.8e-24 115.9 144 50.0
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 3.3e-19 100.1 66 72.7
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 3.3e-11 73.6 257 30.4
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 5.6e-11 72.8 54 63.0
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 8.9e-09 65.5 167 29.3
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 2.0e-08 64.3 167 31.1
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 3.4e-08 63.5 173 31.2
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 4.4e-08 63.2 167 31.1
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 4.4e-08 63.2 167 31.1
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 7.6e-08 62.4 170 28.8
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 1.3e-07 61.6 167 30.5
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 1.3e-07 61.6 167 30.5
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 1.7e-07 61.2 170 29.4
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 1.7e-07 61.2 170 29.4
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 1.7e-07 61.2 170 29.4
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 167 30.5
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 4.9e-07 59.7 170 28.8
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 4.9e-07 59.7 170 28.8
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 4.9e-07 59.7 170 28.2
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 4.9e-07 59.7 173 27.2
BcaC03g14124 Brassica carinata HOM05D003204 ORTHO05D003566 8.4e-07 58.9 167 29.9
BolC2t07474H Brassica oleracea HOM05D003204 ORTHO05D003566 8.4e-07 58.9 167 29.9
FAN26G1065 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 29.3
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.4e-06 58.2 167 27.5
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 1.4e-06 58.2 167 29.3
BraA02t05870Z Brassica rapa HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 29.9
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 28.1
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 28.1
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 2.4e-06 57.4 167 28.7
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 2.4e-06 57.4 167 29.3
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 2.4e-06 57.4 167 28.1
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 2.4e-06 57.4 167 26.9
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 2.4e-06 57.4 170 27.6
Aa31LG3G13910 Aethionema arabicum HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 27.6
MD15G1155500 Malus domestica HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
PSO339G4113 Papaver somniferum HOM05D003204 ORTHO05D003566 3.2e-06 57.0 167 26.9
Carub.0008s1862 Capsella rubella HOM05D003204 ORTHO05D003566 4.2e-06 56.6 167 29.3
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 4.2e-06 56.6 167 28.1
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 5.4e-06 56.2 167 26.9
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 5.4e-06 56.2 167 28.7
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 9.3e-06 55.5 170 24.1


User provided reference genes

Program Settings