Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G207200 Glycine max HOM05D000113 ORTHO05D026581 2.9e-44 181.4 87 100.0
Glyma.05G146100 Glycine max HOM05D000113 ORTHO05D008562 1.5e-11 72.8 42 83.3
Lalb_Chr13g0294201 Lupinus albus HOM05D000113 ORTHO05D008562 1.5e-11 72.8 42 83.3
Phvul.002G175400 Phaseolus vulgaris HOM05D000113 ORTHO05D008562 1.5e-11 72.8 42 83.3
Gohir.1Z049348 Gossypium hirsutum HOM05D000113 ORTHO05D008562 3.3e-11 71.6 47 74.5
Gohir.A03G128100 Gossypium hirsutum HOM05D000113 ORTHO05D008562 3.3e-11 71.6 47 74.5
Lj4g0017956 Lotus japonicus HOM05D000113 ORTHO05D008562 4.3e-11 71.2 42 81.0
VMungo0251G3793 Vigna mungo HOM05D000113 ORTHO05D008562 4.3e-11 71.2 42 81.0
Gohir.D02G151600 Gossypium hirsutum HOM05D000113 ORTHO05D008562 5.6e-11 70.9 42 78.6
Gorai.005G170100 Gossypium raimondii HOM05D000113 ORTHO05D008562 5.6e-11 70.9 42 78.6
TPR.G17102 Trifolium pratense HOM05D000113 ORTHO05D008562 5.6e-11 70.9 42 78.6
MELO3C010734.2 Cucumis melo HOM05D000113 ORTHO05D008562 7.3e-11 70.5 42 78.6
CsaV3_2G025370 Cucumis sativus L. HOM05D000113 ORTHO05D008562 7.3e-11 70.5 42 78.6
DCAR_031186 Daucus carota HOM05D000113 ORTHO05D008562 7.3e-11 70.5 42 76.2
Ca_18059_v3 Cicer arietinum L. HOM05D000113 ORTHO05D008562 9.6e-11 70.1 42 78.6
COL.COLO4_12821 Corchorus olitorius HOM05D000113 ORTHO05D008562 9.6e-11 70.1 55 67.3
Sc11g0000600 Simmondsia chinensis HOM05D000113 ORTHO05D008562 9.6e-11 70.1 42 78.6
arahy.Tifrunner.gnm1.ann1.NKV86Z Arachis hypogaea HOM05D000113 ORTHO05D008562 1.6e-10 69.3 40 85.0
Potri.010G057200 Populus trichocarpa HOM05D000113 ORTHO05D008562 1.6e-10 69.3 42 76.2
Ciclev10030845m.g Citrus clementina HOM05D000113 ORTHO05D008562 2.1e-10 68.9 42 71.4
Cfa009345 Carpinus fangiana HOM05D000113 ORTHO05D008562 2.8e-10 68.6 42 73.8
CiPaw.05G113600 Carya illinoinensis HOM05D000113 ORTHO05D008562 2.8e-10 68.6 42 73.8
QL03p054546 Quercus lobata HOM05D000113 ORTHO05D008562 2.8e-10 68.6 42 73.8
Hund06073 Selenicereus undatus HOM05D000113 ORTHO05D008562 2.8e-10 68.6 62 58.1
Thecc.02G275600 Theobroma cacao HOM05D000113 ORTHO05D008562 2.8e-10 68.6 42 76.2
Sabra10G0048000 Salix brachista HOM05D000113 ORTHO05D008562 3.6e-10 68.2 40 82.5
SGA_v2.0_scaffold87G27135 Striga asiatica HOM05D002893 ORTHO05D008562 3.6e-10 68.2 42 73.8
CANSAT01G2860 Cannabis sativa HOM05D000113 ORTHO05D008562 4.8e-10 67.8 42 71.4
Eucgr.H04661 Eucalyptus grandis HOM05D000113 ORTHO05D008562 4.8e-10 67.8 42 73.8
Psat3g127880 Pisum sativum HOM05D000113 ORTHO05D008562 6.2e-10 67.4 42 73.8
Sed0020200 Sechium edule HOM05D000113 ORTHO05D008562 6.2e-10 67.4 40 80.0
CSS0049691 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008562 8.1e-10 67.0 42 71.4
TAR622G1389 Trochodendron aralioides HOM05D000113 ORTHO05D008562 8.1e-10 67.0 42 71.4
CSS0012872 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008562 1.1e-09 66.6 41 73.2
Manes.13G016800 Manihot esculenta HOM05D000113 ORTHO05D008562 1.1e-09 66.6 42 69.0
Atru.chr12.1400 Acer truncatum HOM05D000113 ORTHO05D008562 1.4e-09 66.2 42 71.4
Aqoxy5G03470 Aquilegia oxysepala HOM05D000113 ORTHO05D008562 1.8e-09 65.9 42 69.0
MSTRG.13319 Avicennia marina HOM05D000113 ORTHO05D008562 1.8e-09 65.9 42 71.4
MBI11_g06758_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D008562 1.8e-09 65.9 41 73.2
Medtr8g080240 Medicago truncatula HOM05D000113 ORTHO05D008562 1.8e-09 65.9 42 71.4
Actinidia08083 Actinidia chinensis HOM05D000113 ORTHO05D008562 2.4e-09 65.5 42 69.0
ClCG08G017250 Citrullus lanatus HOM05D000113 ORTHO05D008562 2.4e-09 65.5 41 80.5
Dinv14809 Davidia involucrata HOM05D000113 ORTHO05D008562 2.4e-09 65.5 42 69.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 2.4e-09 65.5 42 69.0
Hma1.2p1_0167F.1_g073650 Hydrangea macrophylla HOM05D000113 ORTHO05D008562 2.4e-09 65.5 42 69.0
Prupe.1G232100 Prunus persica HOM05D000113 ORTHO05D008562 2.4e-09 65.5 42 71.4
THA.LOC104820519 Tarenaya hassleriana HOM05D000113 ORTHO05D008562 2.4e-09 65.5 42 66.7
AL1G41380 Arabidopsis lyrata HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
BcaNung07310 Brassica carinata HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
A08p26020 Brassica napus HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
C03p74630 Brassica napus HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
BolC3t19711H Brassica oleracea HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
BraA08t34552Z Brassica rapa HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
Carub.0001s2635 Capsella rubella HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
Cc10_g14680 Coffea canephora HOM05D000113 ORTHO05D008562 3.1e-09 65.1 45 66.7
Thhalv10006961m.g Eutrema salsugineum HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
HanXRQChr17g0569131 Helianthus annuus HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 66.7
Sp1g24080 Schrenkiella parvula HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 71.4
Solyc05g015040.4 Solanum lycopersicum HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 69.0
Sopen05g010270 Solanum pennellii HOM05D000113 ORTHO05D008562 3.1e-09 65.1 42 69.0
CAN.G49.26 Capsicum annuum HOM05D000113 ORTHO05D008562 4.0e-09 64.7 43 69.8
Lsat_1_v5_gn_4_2981 Lactuca sativa HOM05D000113 ORTHO05D008562 4.0e-09 64.7 42 66.7
Lj3C1065T13 Lonicera japonica HOM05D000113 ORTHO05D008562 4.0e-09 64.7 40 72.5
Nn4g22387 Nelumbo nucifera HOM05D000113 ORTHO05D008562 4.0e-09 64.7 42 69.0
Rhsim12G0029400 Rhododendron simsii HOM05D000113 ORTHO05D008562 4.0e-09 64.7 40 75.0
Migut.E00033 Erythranthe guttata HOM05D000113 ORTHO05D008562 5.3e-09 64.3 42 69.0
SalBow8G0141 Salvia bowleyana HOM05D000113 ORTHO05D008562 5.3e-09 64.3 42 66.7
GSVIVG01010362001 Vitis vinifera HOM05D000113 ORTHO05D008562 5.3e-09 64.3 40 77.5
Zm00001eb375140 Zea mays HOM05D000113 ORTHO05D008562 5.3e-09 64.3 42 64.3
Aa31sc262G20 Aethionema arabicum HOM05D000113 ORTHO05D008562 6.9e-09 63.9 42 69.0
AT1G27900 Arabidopsis thaliana HOM05D000113 ORTHO05D008562 6.9e-09 63.9 42 69.0
CARHR027330 Cardamine hirsuta HOM05D000113 ORTHO05D008562 6.9e-09 63.9 42 69.0
vmacro01078 Vaccinium macrocarpon HOM05D000113 ORTHO05D008562 6.9e-09 63.9 40 75.0
Os11g0310800 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D008562 9.0e-09 63.5 42 64.3
CDE08G0558 Ceratophyllum demersum HOM05D000113 ORTHO05D008562 1.2e-08 63.2 41 63.4
AUR62022360 Chenopodium quinoa HOM05D000113 ORTHO05D026581 2.6e-08 62.0 42 69.0
Oeu049156.1 Olea europaea HOM05D000113 ORTHO05D008562 2.6e-08 62.0 40 67.5
Rhsim10G0027500 Rhododendron simsii HOM05D000113 ORTHO05D008562 2.6e-08 62.0 42 69.0
ATR0686G052 Amborella trichopoda HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 64.3
FvH4_4g24140 Fragaria vesca HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 69.0
MD13G1115200 Malus domestica HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 66.7
PSO063G2601 Papaver somniferum HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 64.3
PSO782G4255 Papaver somniferum HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 64.3
RcHm_v2.0_Chr4g0430911 Rosa chinensis HOM05D000113 ORTHO05D008562 3.4e-08 61.6 42 69.0
AUR62005584 Chenopodium quinoa HOM05D000113 ORTHO05D008562 4.4e-08 61.2 42 66.7
AUR62024146 Chenopodium quinoa HOM05D000113 ORTHO05D008562 4.4e-08 61.2 46 60.9
EL10Ac6g13461 Beta vulgaris HOM05D000113 ORTHO05D008562 7.6e-08 60.5 42 66.7
Ah.03g133940 Amaranthus hybridus HOM05D000113 ORTHO05D008562 9.9e-08 60.1 42 64.3
FAN12G0097 Fragaria x ananassa HOM05D000113 ORTHO05D008562 1.7e-07 59.3 40 72.5
ATR0686G043 Amborella trichopoda HOM05D000113 ORTHO05D026581 2.2e-07 58.9 43 60.5
AUR62042389 Chenopodium quinoa HOM05D008055 ORTHO05D009927 3.8e-07 58.2 41 65.9
Peaxi162Scf00128g01050 Petunia axillaris HOM05D000113 ORTHO05D008562 1.4e-06 56.2 36 72.2
Mapoly0039s0062 Marchantia polymorpha HOM05D000113 ORTHO05D008562 1.9e-06 55.8 42 54.8
ATR0609G086 Amborella trichopoda HOM05D000113 ORTHO05D013997 3.2e-06 55.1 42 57.1
SMO364G0276 Selaginella moellendorffii HOM05D000113 ORTHO05D008562 3.2e-06 55.1 42 54.8


User provided reference genes

Program Settings