Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 4.7e-100 367.9 183 100.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.5e-90 336.3 181 95.0
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 8.3e-81 303.9 183 85.8
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 7.0e-80 300.8 174 86.2
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 1.6e-79 299.7 183 83.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 3.5e-79 298.5 174 85.6
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 1.7e-78 296.2 177 83.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 3.8e-78 295.0 174 84.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 6.1e-76 287.7 183 80.9
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 5.2e-75 284.6 183 78.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 2.3e-70 269.2 205 69.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 3.3e-61 238.8 174 67.2
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 1.6e-60 236.5 183 62.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 2.8e-60 235.7 141 87.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 2.8e-60 235.7 183 62.8
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 1.8e-59 233.0 178 62.4
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 5.8e-58 228.0 177 64.4
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 3.7e-57 225.3 183 60.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 4.9e-57 224.9 177 59.9
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 6.4e-57 224.6 183 61.2
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 8.3e-57 224.2 183 60.7
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 2.4e-56 222.6 183 60.1
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 3.2e-56 222.2 183 59.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 3.2e-56 222.2 183 59.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.2e-55 220.3 182 58.8
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 1.6e-55 219.9 183 61.7
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 1.6e-55 219.9 183 61.7
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.6e-55 219.9 177 60.5
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.7e-55 219.2 183 59.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 2.7e-55 219.2 183 60.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 3.5e-55 218.8 170 61.2
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 1.3e-54 216.9 177 58.2
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 1.7e-54 216.5 183 57.4
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 3.0e-54 215.7 177 59.3
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 3.0e-54 215.7 177 59.3
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 3.9e-54 215.3 183 61.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 6.6e-54 214.5 183 60.7
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 6.6e-54 214.5 183 56.3
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 8.6e-54 214.2 177 60.5
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 1.5e-53 213.4 196 57.7
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 3.3e-53 212.2 177 58.2
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 3.3e-53 212.2 183 59.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 3.3e-53 212.2 183 57.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.3e-53 211.8 183 56.3
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 4.3e-53 211.8 183 56.3
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 4.3e-53 211.8 119 89.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 5.6e-53 211.5 177 58.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.8e-52 209.1 177 59.3
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 2.8e-52 209.1 183 59.0
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.6e-52 208.8 177 57.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 8.1e-52 207.6 183 59.0
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.4e-51 206.8 177 58.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 1.4e-51 206.8 177 58.2
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 3.1e-51 205.7 179 53.6
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.0e-50 203.0 183 56.3
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.6e-50 202.6 177 57.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 7.6e-50 201.1 177 54.2
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 7.6e-50 201.1 182 58.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 2.9e-49 199.1 183 55.7
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 6.4e-49 198.0 183 56.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 8.4e-49 197.6 183 54.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.1e-48 197.2 177 52.5
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 1.1e-48 197.2 183 57.4
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 1.4e-48 196.8 257 44.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 1.9e-48 196.4 183 53.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.4e-48 196.1 224 46.9
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.1e-48 195.3 183 53.6
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.2e-47 193.7 183 53.6
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 1.6e-47 193.4 183 53.6
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 4.6e-47 191.8 183 53.0
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.6e-47 191.8 183 53.6
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 7.8e-47 191.0 183 52.5
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 1.3e-46 190.3 182 56.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 3.9e-46 188.7 182 54.4
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 8.7e-46 187.6 198 50.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.5e-45 186.8 183 52.5
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 5.6e-45 184.9 183 50.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 7.3e-45 184.5 186 53.2
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.1e-44 183.0 183 50.8
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.1e-44 183.0 183 50.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 8.1e-44 181.0 178 52.8
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 1.8e-43 179.9 181 51.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 5.2e-43 178.3 187 48.1
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 6.9e-43 177.9 128 68.0
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 4.4e-42 175.3 183 52.5
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 4.9e-41 171.8 177 47.5
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.4e-41 171.4 183 50.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.4e-40 170.2 177 49.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.2e-40 169.1 177 48.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 7.1e-40 167.9 216 43.1
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 1.3e-38 163.7 185 50.8
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.7e-38 163.3 175 49.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 5.1e-38 161.8 183 47.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 6.6e-38 161.4 177 45.8
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 1.5e-37 160.2 222 41.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 3.3e-37 159.1 184 46.2
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 5.6e-37 158.3 185 49.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-35 153.3 183 45.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-34 150.2 152 52.0
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-32 143.3 100 74.0
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.5e-31 139.0 89 75.3
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.3e-30 137.1 174 40.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.6e-29 131.0 177 41.2
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 9.6e-29 131.0 165 40.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.7e-28 129.0 175 45.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.1e-27 125.9 174 40.8
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 4.0e-27 125.6 125 52.8
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 6.9e-27 124.8 126 50.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.6e-26 122.9 135 48.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.9e-25 119.4 85 74.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 9.3e-24 114.4 165 38.8
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-22 110.5 85 65.9
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 6.7e-22 108.2 125 44.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 4.3e-21 105.5 131 48.1
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 5.6e-21 105.1 168 38.1
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 3.1e-19 99.4 172 37.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 8.2e-12 74.7 56 60.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 4.2e-08 62.4 174 26.4
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.6e-07 59.3 56 51.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.0e-06 56.2 56 50.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.0e-06 56.2 56 50.0


User provided reference genes

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