Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 5.9e-211 737.3 367 100.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 6.0e-163 577.8 337 85.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.0e-158 562.8 341 82.4
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.1e-151 540.4 331 81.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.5e-150 536.6 346 77.7
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 6.2e-144 514.6 354 73.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 9.9e-142 507.3 373 69.4
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.1e-139 499.6 352 72.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.1e-138 495.0 353 70.8
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 8.4e-133 477.6 345 70.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 7.1e-124 448.0 344 63.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 6.7e-122 441.4 345 64.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 9.6e-121 437.6 342 64.9
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 3.9e-90 335.9 366 47.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.1e-89 334.3 365 51.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 8.2e-88 328.2 347 50.4
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.3e-87 325.5 358 48.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.6e-86 323.2 364 49.7
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.3e-85 320.9 342 49.4
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.2e-85 320.1 351 50.4
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 5.0e-85 318.9 352 50.6
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 9.4e-84 314.7 356 47.8
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-83 313.5 360 48.9
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.2e-82 308.9 347 48.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.8e-82 308.1 347 47.3
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.2e-81 307.8 352 48.3
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-81 307.4 349 47.6
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.4e-81 305.8 360 48.1
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.7e-81 305.4 347 47.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.8e-80 302.4 360 46.9
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-79 301.2 346 46.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.4e-79 300.8 366 44.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-79 300.4 347 47.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-79 300.4 347 47.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.4e-79 300.1 359 46.5
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.1e-79 299.7 372 46.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.1e-79 298.1 357 45.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 9.1e-79 298.1 346 49.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.7e-78 296.6 356 44.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.9e-78 295.4 354 47.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.0e-77 294.7 355 45.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.0e-77 294.7 346 48.3
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.7e-77 293.9 341 46.9
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.7e-77 293.9 360 45.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.9e-77 293.1 353 47.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 8.5e-77 291.6 365 44.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.2e-76 289.3 356 45.2
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.2e-76 288.5 346 46.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.2e-75 287.7 335 47.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.8e-74 282.0 353 45.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 5.7e-73 278.9 362 44.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 7.5e-73 278.5 344 45.3
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 7.5e-73 278.5 343 45.8
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.8e-73 278.1 382 42.9
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.3e-72 277.7 362 42.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.8e-72 276.6 345 47.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 3.7e-72 276.2 341 45.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-68 264.6 358 43.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-68 264.6 363 41.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.5e-68 263.5 374 42.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.5e-68 263.5 354 44.6
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.2e-68 262.7 351 42.2
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.2e-68 261.9 343 44.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.7e-67 259.2 362 41.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.4e-66 257.7 356 43.5
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 5.2e-66 255.8 363 41.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.8e-66 255.4 343 42.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.5e-65 254.2 376 39.9
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.6e-65 253.4 355 41.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.4e-65 252.7 364 40.1
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 4.4e-65 252.7 356 42.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.8e-64 250.0 350 42.3
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.8e-64 250.0 348 42.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.8e-63 247.3 345 41.7
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.4e-63 246.9 354 44.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 9.2e-63 245.0 345 38.8
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.0e-62 243.8 347 44.7
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.5e-62 243.0 355 40.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.9e-62 242.3 307 43.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-61 241.5 349 41.5
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.8e-61 239.6 341 44.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.8e-61 239.6 401 38.2
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 5.0e-61 239.2 342 43.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 8.6e-61 238.4 357 39.2
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-60 238.0 354 42.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-60 238.0 343 44.3
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.5e-60 236.9 344 44.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.3e-60 236.1 347 43.8
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 5.6e-60 235.7 341 44.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.3e-58 230.3 347 43.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.0e-58 229.9 348 42.5
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.9e-58 228.4 343 42.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.9e-58 228.4 348 41.7
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.2e-57 228.0 346 41.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 5.7e-57 225.7 357 40.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 9.8e-57 224.9 341 42.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.9e-56 222.6 340 42.9
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-55 221.5 341 42.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-55 221.5 344 42.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.4e-55 221.1 347 38.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 5.4e-55 219.2 344 42.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-54 217.6 362 39.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-54 217.6 362 38.4
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-54 217.2 339 42.2
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.5e-54 216.5 341 38.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 6.6e-53 212.2 350 40.6
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.9e-52 210.7 338 40.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.5e-52 210.3 365 39.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-49 199.9 291 42.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.4e-49 199.5 361 39.3
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.9e-48 196.1 311 40.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.1e-47 194.9 153 63.4
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.4e-47 193.7 353 35.7
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.7e-45 187.6 337 37.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 3.0e-45 186.8 355 35.8
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 8.6e-45 185.3 240 45.4
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-44 184.9 290 39.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.3e-44 183.3 349 38.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 7.3e-44 182.2 362 35.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-43 181.0 284 37.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.1e-43 180.6 239 43.5
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.2e-42 176.0 186 52.2
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.0e-37 160.2 195 49.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 6.8e-34 149.1 287 36.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.8e-32 143.3 122 59.8
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.5e-30 136.7 187 44.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 8.7e-29 132.1 219 37.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.6e-25 120.6 94 59.6
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.9e-24 117.1 114 55.3
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.9e-24 117.1 156 41.0
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 9.3e-23 112.1 367 28.9
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.1e-22 110.9 140 42.9
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 6.6e-21 105.9 77 62.3
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.3e-20 103.6 141 41.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 4.5e-17 93.2 217 32.3
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-15 88.2 86 57.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 4.2e-15 86.7 439 24.8
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.5e-12 77.4 74 48.6
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.4e-12 75.9 65 58.5
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-11 74.7 65 58.5
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-11 74.3 65 58.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-11 74.3 65 58.5
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.1e-11 72.4 65 56.9
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-10 71.2 65 55.4
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 4.0e-10 70.1 76 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.6e-09 67.4 144 35.4
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 5.8e-09 66.2 295 27.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 6.4e-08 62.8 42 69.0
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.1e-07 62.0 46 63.0
arahy.Tifrunner.gnm1.ann1.FQ0JYV Arachis hypogaea HOM05D028796 ORTHO05D004224 5.5e-07 59.7 81 46.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 7.1e-07 59.3 31 87.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 7.1e-07 59.3 59 47.5


User provided reference genes

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