Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 6.5e-161 570.9 327 100.0
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.2e-135 486.9 327 87.8
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 1.5e-128 463.4 327 77.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 8.3e-116 421.0 297 75.4
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.3e-112 407.9 328 71.3
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.1e-107 394.0 330 67.3
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 2.4e-107 392.9 332 70.8
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 4.7e-103 378.6 328 67.1
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.3e-97 360.5 333 64.9
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-97 360.1 329 65.3
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 9.6e-96 354.4 329 64.7
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 1.6e-95 353.6 298 67.4
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.4e-94 350.5 329 64.7
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 4.3e-80 302.4 331 54.4
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.9e-76 289.7 371 48.8
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.2e-74 284.3 331 51.7
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.5e-74 282.7 382 48.7
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.8e-73 280.4 334 52.1
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 3.9e-73 279.3 352 51.4
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.3e-72 276.2 330 55.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.3e-72 276.2 327 51.4
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 7.4e-72 275.0 339 51.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 1.3e-71 274.2 327 50.5
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 3.7e-71 272.7 327 53.5
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.7e-71 272.7 342 49.4
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.4e-70 270.0 331 52.0
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 5.3e-70 268.9 328 50.3
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.9e-70 268.5 328 51.2
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.9e-70 268.5 405 45.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.2e-69 267.7 330 48.2
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.5e-69 267.3 327 51.4
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 2.0e-69 266.9 330 52.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.7e-68 263.8 333 52.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.2e-68 263.5 328 51.8
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.9e-67 260.4 337 48.4
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.1e-66 256.9 329 49.8
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 6.0e-66 255.4 328 48.8
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.3e-65 253.4 337 49.0
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 3.0e-65 253.1 346 46.8
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 3.9e-65 252.7 330 48.5
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 3.9e-65 252.7 346 47.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 6.7e-65 251.9 199 69.3
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 5.7e-64 248.8 332 48.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 7.4e-64 248.4 330 47.0
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.8e-63 246.5 333 47.7
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 2.8e-63 246.5 329 47.7
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 3.7e-63 246.1 337 49.3
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 4.8e-63 245.7 330 49.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.8e-63 245.7 340 47.4
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.2e-61 241.1 329 47.1
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 2.0e-61 240.4 361 44.6
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 3.4e-61 239.6 339 45.7
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 3.4e-61 239.6 335 45.7
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.9e-59 233.8 331 48.6
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.5e-59 233.4 330 45.8
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.6e-58 230.7 324 45.4
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.7e-58 229.9 330 46.1
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 5.1e-57 225.7 366 48.4
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 6.7e-57 225.3 358 42.7
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.1e-56 224.6 334 46.4
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.5e-56 224.2 353 45.0
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.3e-55 221.1 374 42.5
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.8e-55 219.2 300 45.7
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 4.8e-55 219.2 327 45.9
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 5.9e-53 212.2 356 40.7
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 2.2e-52 210.3 368 42.1
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.2e-52 210.3 348 40.5
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.5e-52 208.8 189 65.1
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 6.5e-52 208.8 322 45.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.2e-51 206.5 290 47.9
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 5.5e-51 205.7 250 50.8
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 4.6e-50 202.6 379 39.1
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 6.1e-50 202.2 326 45.1
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.9e-49 199.5 231 52.8
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 6.3e-47 192.2 322 40.7
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 1.1e-46 191.4 325 44.6
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.8e-46 190.7 288 45.8
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.4e-46 190.3 260 49.2
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 4.1e-46 189.5 247 48.6
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 4.1e-46 189.5 336 44.3
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.9e-46 188.7 134 76.9
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.0e-45 187.2 283 44.5
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 5.9e-45 185.7 412 36.7
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.3e-44 184.5 327 40.4
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 5.0e-44 182.6 286 42.7
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.4e-43 181.0 249 47.0
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.7e-42 176.8 249 47.0
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.7e-42 176.8 249 47.0
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 3.6e-42 176.4 255 44.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 6.1e-42 175.6 244 48.0
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 6.1e-42 175.6 244 48.0
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.0e-41 174.9 282 44.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 6.7e-41 172.2 338 40.8
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.5e-40 171.0 389 36.2
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.0e-40 170.6 373 39.7
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.1e-38 162.9 420 34.3
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 5.3e-38 162.5 283 39.9
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 5.3e-38 162.5 371 35.8
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.7e-37 158.7 130 66.9
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 8.5e-36 155.2 422 33.6
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.9e-35 154.1 424 33.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.9e-35 154.1 261 42.1
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 2.5e-35 153.7 369 34.1
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 5.5e-35 152.5 250 45.6
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.7e-34 150.2 195 48.7
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.1e-30 138.3 261 39.8
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.4e-30 137.9 145 55.9
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 2.6e-29 133.7 236 41.1
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 3.5e-29 133.3 294 40.5
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.5e-27 127.9 280 33.9
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 4.2e-27 126.3 369 37.1
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 9.4e-27 125.2 179 45.3
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 9.1e-22 108.6 68 76.5
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.2e-21 108.2 65 78.5
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 2.0e-21 107.5 86 66.3
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.2e-20 104.0 67 79.1
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.1e-19 101.7 136 50.0
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.9e-19 100.9 132 56.8
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.9e-19 100.9 154 42.9
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.1e-18 95.9 141 44.0
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 8.0e-18 95.5 140 43.6
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.7e-15 87.8 186 36.0
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 5.4e-14 82.8 103 47.6
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 9.1e-14 82.0 170 36.5
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-13 80.9 110 43.6
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-13 80.9 110 43.6
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 1.7e-12 77.8 109 45.0
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 2.5e-11 73.9 140 36.4
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 1.6e-10 71.2 159 34.0
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.2e-06 57.0 90 42.2
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.2e-06 57.0 90 42.2


User provided reference genes

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