Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 0.0e+00 1464.5 753 100.0
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1340.9 753 91.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 0.0e+00 1255.0 756 85.1
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 0.0e+00 1250.0 756 84.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 0.0e+00 1231.5 737 84.9
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 0.0e+00 1221.8 753 82.6
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1212.2 758 83.2
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 0.0e+00 1207.2 753 83.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1201.0 779 81.0
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 0.0e+00 1182.5 656 92.7
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1141.3 751 77.1
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1140.2 751 77.1
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1124.8 748 76.1
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1118.2 746 76.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1116.3 749 75.7
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1104.0 745 75.8
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1099.3 745 75.0
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1096.6 748 75.5
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 751 74.0
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1086.6 746 74.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 747 74.8
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 0.0e+00 1081.6 756 74.3
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1081.6 746 74.7
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1081.2 745 75.3
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1080.9 756 74.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 741 75.4
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 0.0e+00 1077.0 753 73.2
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1075.8 742 74.9
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 5.2e-312 1074.7 746 73.2
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 754 75.1
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.5e-311 1072.4 745 74.2
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.6e-311 1071.6 750 75.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 751 73.2
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 755 74.2
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.9e-309 1065.4 743 74.2
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.5e-309 1065.1 744 72.6
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.3e-308 1062.8 744 72.6
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.6e-308 1061.2 755 71.7
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 3.6e-308 1061.2 750 73.9
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 790 69.7
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.2e-306 1056.2 748 72.3
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 746 72.4
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 750 72.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.5e-306 1054.3 746 72.8
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 7.6e-306 1053.5 759 71.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.7e-305 1052.4 764 73.6
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 6.4e-305 1050.4 776 69.8
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 8.4e-305 1050.0 750 72.9
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 744 71.8
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 3.2e-304 1048.1 746 71.8
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 3.2e-304 1048.1 750 73.1
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 748 72.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 751 72.7
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 789 70.0
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 751 72.3
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 5.1e-302 1040.8 756 72.0
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 8.7e-302 1040.0 749 72.9
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-301 1039.6 751 72.3
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 1.9e-301 1038.9 747 71.9
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.1e-300 1035.4 751 72.4
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 8.1e-300 1033.5 752 71.5
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-299 1032.7 696 74.9
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 5.3e-299 1030.8 750 72.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 6.9e-299 1030.4 752 69.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.5e-298 1029.2 768 68.8
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.5e-298 1029.2 756 71.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.5e-298 1027.7 775 69.8
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.0e-297 1026.5 749 71.4
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 759 70.5
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 756 71.4
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.9e-297 1025.0 754 72.4
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.2e-296 1021.1 754 72.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 754 69.8
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.1e-293 1013.1 749 70.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 748 70.9
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 3.7e-292 1008.1 755 70.7
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 6.2e-292 1007.3 755 70.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.4e-291 1005.4 750 70.8
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 748 70.6
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 1.2e-290 1003.0 750 70.5
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 5.8e-290 1000.7 750 68.3
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.9e-288 995.7 714 72.4
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.1e-285 986.5 748 68.6
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.0e-282 975.7 745 67.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.0e-281 971.1 743 67.7
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 7.9e-279 963.8 697 70.2
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.3e-276 956.4 709 68.8
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 3.4e-274 948.3 658 75.2
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.0e-273 946.8 749 67.3
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 3.3e-269 931.8 654 73.7
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 7.4e-269 930.6 745 67.1
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-263 913.3 613 78.5
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 1.5e-261 906.4 832 58.5
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.7e-255 885.6 741 61.3
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.5e-237 826.6 534 78.3
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.0e-237 826.2 748 59.5
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.1e-235 818.5 713 62.0
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 7.0e-227 791.2 500 80.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.0e-218 761.5 555 71.4
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.9e-217 758.8 552 71.2
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.7e-194 682.9 516 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 5.6e-184 648.7 620 56.0
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.3e-172 610.9 689 52.0
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 8.2e-167 591.7 475 66.5
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.4e-165 586.3 452 66.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.6e-160 570.1 454 65.6
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.6e-157 560.1 435 67.4
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.5e-140 502.3 420 62.1
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 9.4e-139 498.4 427 58.5
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 3.0e-137 493.4 434 57.6
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 6.5e-132 475.7 399 62.7
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.1e-126 456.4 370 63.8
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.5e-125 453.4 370 63.5
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.3e-116 424.1 502 50.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 3.3e-115 420.2 224 94.2
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 7.0e-110 402.5 259 81.5
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 4.4e-96 356.7 269 72.5
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.0e-72 278.1 231 64.9
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.8e-68 265.0 227 63.0
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 3.0e-68 264.2 156 87.8
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.0e-68 264.2 142 91.5
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 4.0e-65 253.8 168 74.4
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 7.6e-64 249.6 160 78.8
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.1e-61 241.5 143 81.8
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.7e-60 236.5 140 81.4
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 3.7e-58 230.7 136 85.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 8.5e-55 219.5 304 44.1
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 2.3e-52 211.5 309 44.3
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.3e-51 207.6 128 79.7
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 2.6e-48 198.0 107 93.5
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.5e-40 172.2 95 87.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 5.2e-36 157.1 124 66.1
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.0e-35 155.2 296 35.8
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 2.6e-35 154.8 118 64.4
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.4e-33 149.1 131 61.8
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 9.4e-30 136.3 81 79.0
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.2e-29 136.0 132 56.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.8e-26 124.8 92 70.7
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.3e-18 99.4 72 69.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.4e-17 95.1 58 72.4
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.7e-16 91.7 58 69.0
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.5e-16 91.3 136 37.5
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.5e-16 90.9 53 84.9
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 6.5e-15 87.0 143 42.0
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.5e-14 85.1 172 35.5
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.8e-13 81.6 52 76.9
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.4e-12 79.3 72 56.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 5.2e-12 77.4 52 73.1
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.7e-10 72.4 44 75.0
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.0e-08 65.5 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 2.9e-07 61.6 54 66.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 93.1


User provided reference genes

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