Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 3.0e-142 508.4 248 100.0
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 9.8e-101 370.5 210 87.6
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.6e-95 353.2 226 78.3
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 9.8e-93 344.0 210 81.4
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 3.7e-84 315.5 202 73.3
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 4.9e-84 315.1 210 74.3
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 5.6e-80 301.6 219 68.5
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 2.1e-74 283.1 210 67.6
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 1.4e-67 260.4 207 61.4
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 4.7e-63 245.4 231 55.0
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 1.8e-62 243.4 209 56.5
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 4.2e-59 232.3 229 53.7
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 1.0e-57 227.6 150 70.7
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 1.0e-57 227.6 242 48.8
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 1.7e-57 226.9 210 55.7
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 3.0e-57 226.1 209 56.5
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 5.1e-57 225.3 247 49.4
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 2.1e-55 219.9 209 53.6
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 3.6e-55 219.2 208 55.8
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 1.8e-54 216.9 209 51.2
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 5.8e-53 211.8 210 51.0
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 9.9e-53 211.1 209 52.2
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 1.3e-52 210.7 209 53.1
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 8.4e-52 208.0 217 50.2
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.6e-50 202.2 209 50.7
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 1.0e-49 201.1 230 48.7
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 2.3e-49 199.9 208 50.0
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.6e-49 198.4 209 50.2
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 8.7e-49 198.0 242 43.8
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 1.9e-48 196.8 238 47.5
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 1.9e-48 196.8 202 52.0
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 1.9e-48 196.8 207 50.2
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 2.5e-48 196.4 217 47.9
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 3.3e-48 196.1 208 50.0
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 4.3e-48 195.7 144 68.1
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 4.3e-48 195.7 151 64.2
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 2.1e-47 193.4 149 60.4
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.8e-47 193.0 151 61.6
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 3.6e-47 192.6 204 50.5
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 1.1e-46 191.0 230 43.9
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.4e-46 190.7 204 50.0
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 1.8e-46 190.3 204 50.5
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 1.8e-46 190.3 204 50.0
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.8e-46 190.3 152 62.5
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.8e-46 190.3 213 47.4
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 5.3e-46 188.7 213 43.7
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 2.0e-45 186.8 204 49.0
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 2.6e-45 186.4 204 49.0
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 2.9e-44 183.0 204 48.0
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 8.4e-44 181.4 204 47.1
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 8.4e-44 181.4 206 45.6
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 1.1e-43 181.0 204 47.5
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 5.4e-43 178.7 209 43.5
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 7.1e-43 178.3 207 44.4
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 2.7e-42 176.4 222 45.5
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 1.0e-41 174.5 229 43.2
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 1.3e-41 174.1 204 45.6
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 3.0e-41 172.9 209 45.9
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 3.9e-41 172.6 151 55.6
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 1.9e-40 170.2 209 45.5
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 2.5e-40 169.9 235 40.0
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 4.3e-40 169.1 206 45.1
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 5.6e-40 168.7 152 53.9
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 1.3e-39 167.5 206 46.6
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 2.1e-39 166.8 206 45.1
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 8.1e-39 164.9 207 42.0
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 6.9e-38 161.8 151 55.6
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 6.9e-38 161.8 209 42.6
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 6.9e-38 161.8 207 43.0
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 1.5e-37 160.6 207 42.0
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 7.6e-37 158.3 208 42.3
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 1.7e-36 157.1 209 42.1
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.9e-36 156.4 204 41.7
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 5.5e-35 152.1 221 40.3
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 2.3e-33 146.7 168 46.4
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 3.0e-33 146.4 202 40.6
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.9e-32 143.7 202 41.6
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 2.4e-30 136.7 202 39.1
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 5.3e-30 135.6 153 44.4
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 6.9e-30 135.2 206 37.9
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 5.5e-27 125.6 148 42.6
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.9e-25 119.4 176 39.2
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.5e-16 90.9 123 42.3
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 2.5e-11 73.6 58 63.8
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 2.1e-10 70.5 120 32.5
arahy.Tifrunner.gnm1.ann1.EX7DRT Arachis hypogaea HOM05D006564 ORTHO05D007772 8.8e-09 65.1 49 61.2
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 1.5e-08 64.3 60 55.0
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 3.7e-07 59.7 204 27.0
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 8.2e-07 58.5 35 74.3
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.4e-06 57.8 83 32.5
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 9.1e-06 55.1 84 40.5


User provided reference genes

Program Settings