Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 0.0e+00 1152.5 766 100.0
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.3e-305 1052.0 770 94.3
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 9.9e-253 877.1 772 83.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 7.1e-251 870.9 772 81.6
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 4.2e-227 792.0 778 71.1
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.4e-225 786.9 777 71.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.7e-218 762.7 776 70.2
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.0e-217 760.8 776 66.4
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.1e-214 750.7 773 70.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.2e-210 737.3 776 71.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 4.1e-206 722.2 780 68.6
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 6.5e-204 714.9 803 67.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.0e-201 707.6 773 68.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.6e-178 630.6 737 57.9
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 7.5e-176 621.7 779 62.4
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.7e-175 619.4 781 62.4
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.9e-174 617.1 781 61.3
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.7e-173 613.2 777 58.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 4.6e-173 612.5 779 62.9
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.5e-171 606.7 784 60.5
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.8e-169 598.6 792 60.9
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.5e-168 597.4 779 57.9
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.3e-164 584.3 778 56.9
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 5.1e-164 582.4 788 62.3
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 4.3e-163 579.3 777 48.9
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.6e-162 577.4 775 60.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.6e-162 577.4 787 56.4
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 3.2e-158 563.1 748 58.8
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.0e-157 558.9 788 58.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.0e-157 558.9 780 60.8
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.8e-157 558.5 799 55.2
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.7e-156 557.4 747 61.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 5.1e-156 555.8 774 59.4
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.5e-155 554.3 778 58.5
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.9e-155 553.9 748 60.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.5e-155 553.5 778 58.6
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 2.5e-155 553.5 784 55.9
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.4e-153 547.7 774 60.1
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 2.4e-153 547.0 778 56.6
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 4.0e-153 546.2 789 58.4
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 5.2e-153 545.8 783 58.6
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.0e-152 543.9 776 57.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.4e-152 543.1 777 55.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 9.9e-152 541.6 771 59.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.3e-151 541.2 747 60.1
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.2e-149 534.6 776 56.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.6e-149 532.7 785 60.8
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 7.8e-149 531.9 778 58.0
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 7.8e-149 531.9 779 60.3
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-147 528.1 783 54.0
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.2e-146 524.6 774 58.3
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.1e-145 521.5 784 57.5
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.4e-145 521.2 780 56.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 9.9e-144 515.0 794 55.5
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.4e-142 511.1 778 53.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.1e-142 508.8 819 52.7
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.3e-140 503.8 777 52.8
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 3.0e-140 503.4 780 51.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.1e-140 502.7 788 53.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 9.6e-139 498.4 766 55.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 9.9e-136 488.4 777 53.2
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 2.2e-135 487.3 788 57.4
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 6.4e-135 485.7 774 54.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 8.4e-135 485.3 787 54.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 8.4e-135 485.3 787 55.8
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-134 485.0 775 52.3
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.2e-134 483.0 800 51.6
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 9.3e-134 481.9 840 52.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 1.6e-133 481.1 779 56.0
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 4.6e-133 479.6 802 50.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.0e-132 476.9 779 51.9
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 8.7e-132 475.3 794 50.0
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.9e-131 474.2 786 48.7
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.1e-130 470.7 792 55.3
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 3.1e-129 466.8 780 49.2
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.3e-129 466.1 779 53.3
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-128 464.9 776 51.0
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.2e-128 464.9 787 50.8
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.5e-128 464.5 791 52.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.0e-128 464.2 795 48.8
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 3.4e-128 463.4 778 53.6
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 4.5e-128 463.0 764 52.0
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 9.9e-128 461.8 775 53.3
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 9.9e-128 461.8 702 55.0
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.9e-127 460.3 795 52.1
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 6.4e-127 459.1 782 53.1
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 8.4e-127 458.8 775 52.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.1e-125 454.1 794 56.0
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 6.0e-125 452.6 783 54.3
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 6.0e-125 452.6 774 51.8
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-124 451.4 766 53.0
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-124 451.4 767 51.9
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.3e-124 451.4 766 53.0
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.3e-124 451.4 766 53.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 6.7e-124 449.1 779 55.3
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.1e-123 448.4 756 46.6
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 7.4e-123 445.7 787 50.6
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.3e-122 444.9 778 57.3
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.4e-121 440.7 777 53.2
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 2.4e-121 440.7 780 51.4
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 2.6e-120 437.2 796 53.5
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.6e-120 437.2 780 51.8
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.5e-118 430.6 777 51.5
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.2e-118 430.3 784 52.7
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 7.1e-118 429.1 749 55.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.7e-116 422.5 755 55.4
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.1e-115 421.8 778 52.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.1e-110 405.2 797 47.8
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-110 405.2 792 46.2
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 2.0e-104 384.4 745 53.2
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.0e-104 384.4 760 47.6
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.1e-102 378.6 783 47.4
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 2.9e-87 327.4 774 43.3
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 2.9e-87 327.4 714 49.9
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 5.0e-87 326.6 788 45.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.2e-86 322.8 581 53.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.0e-84 317.4 820 43.3
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.2e-82 311.2 712 39.2
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.4e-81 308.5 283 62.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 3.1e-81 307.4 826 44.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 2.2e-79 301.2 332 56.0
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.6e-75 287.7 814 41.5
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 2.4e-73 281.2 697 42.6
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 4.1e-57 227.3 270 54.4
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.0e-57 226.5 234 57.3
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-56 224.9 265 54.7
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.0e-55 221.1 563 46.4
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.6e-51 208.0 762 36.0
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 3.6e-45 187.6 241 49.4
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 3.4e-43 181.0 159 62.9
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 5.4e-41 173.7 296 41.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-40 171.8 273 44.3
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.9e-39 167.5 273 44.3
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.4e-36 158.3 162 63.6
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.7e-31 142.1 126 68.3
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 2.2e-26 125.2 73 86.3
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.4e-25 121.7 71 84.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 2.0e-19 102.1 96 46.9
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.9e-15 87.8 81 53.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.1e-12 79.7 124 42.7
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.5e-11 75.9 84 42.9
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.8e-11 73.9 146 33.6
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.2e-10 72.0 84 50.0
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 3.8e-10 71.2 106 34.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-09 69.7 85 51.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 5.5e-09 67.4 128 39.1
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 9.3e-09 66.6 126 38.9


User provided reference genes

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