Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 0.0e+00 1085.5 537 100.0
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 6.1e-257 890.6 537 82.9
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.0e-248 863.2 534 80.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.4e-237 825.5 538 79.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.1e-218 763.5 541 71.3
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.5e-218 763.1 538 68.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.9e-213 746.1 534 68.7
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.1e-208 730.3 538 66.5
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.6e-204 716.5 535 66.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 7.8e-204 714.1 538 65.4
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 3.0e-179 632.5 541 58.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.3e-178 628.6 545 58.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 8.4e-174 614.4 544 57.2
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.2e-172 610.5 535 56.4
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.1e-172 609.8 547 55.4
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 6.7e-171 604.7 536 57.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.4e-168 597.0 542 57.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.2e-167 594.0 539 54.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 5.8e-167 591.7 535 55.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.2e-166 589.7 537 56.6
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 8.4e-166 587.8 539 53.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.4e-165 587.0 546 55.3
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.9e-163 578.9 541 54.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 8.7e-163 577.8 535 54.6
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 8.7e-163 577.8 536 55.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.3e-162 575.9 543 53.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 8.2e-161 571.2 538 54.1
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-160 570.9 538 54.8
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.8e-160 570.1 546 52.2
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.4e-160 569.7 535 54.8
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.4e-160 569.7 539 54.0
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 4.1e-160 568.9 537 54.9
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 5.3e-160 568.5 536 53.9
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 6.9e-160 568.2 536 53.9
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.9e-160 568.2 538 53.3
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.5e-159 567.0 539 54.0
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.6e-159 566.2 540 53.1
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.5e-159 565.5 534 54.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.8e-158 562.4 529 54.1
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.5e-157 558.5 541 52.9
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.7e-156 556.2 539 52.5
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 6.1e-156 555.1 539 53.4
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 3.0e-155 552.7 542 54.4
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.0e-155 552.7 541 53.0
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-153 547.4 529 53.3
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.8e-153 545.4 527 53.5
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 2.4e-152 543.1 539 51.6
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.8e-150 535.8 536 51.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.5e-150 534.6 537 51.4
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.9e-149 533.5 533 49.9
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.9e-149 533.5 539 51.6
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.2e-148 530.8 540 52.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.6e-148 530.4 535 51.8
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.0e-147 526.2 534 51.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 3.3e-146 522.7 533 50.7
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 2.2e-145 520.0 534 50.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.8e-145 519.6 537 51.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.8e-145 519.6 537 52.0
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.4e-144 516.5 539 52.5
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.9e-144 515.0 535 50.5
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 6.9e-144 515.0 536 50.2
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.0e-142 511.1 539 49.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.3e-142 510.8 534 51.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.4e-141 507.3 541 49.2
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.2e-141 506.1 538 50.0
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 3.2e-141 506.1 446 59.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 7.7e-135 485.0 542 48.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.7e-134 483.8 541 47.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.2e-134 483.4 547 46.1
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 8.5e-134 481.5 543 47.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.2e-133 479.2 555 45.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.1e-132 476.9 546 45.4
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.1e-132 476.9 553 46.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 6.1e-132 475.3 542 47.2
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.8e-131 471.5 540 45.9
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 9.7e-130 468.0 531 46.0
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.8e-129 465.7 552 45.8
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.8e-128 463.8 538 45.2
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.6e-127 460.7 454 54.6
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.9e-127 458.8 541 45.3
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 5.0e-126 455.7 535 46.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.1e-125 454.5 558 45.3
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-125 453.8 534 45.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.5e-125 453.4 534 45.3
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.2e-125 452.6 528 45.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.4e-122 442.6 537 44.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.5e-119 433.0 548 42.2
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 4.5e-119 432.6 536 44.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.9e-119 432.2 537 46.6
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 6.5e-118 428.7 539 44.0
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 9.4e-117 424.9 597 41.0
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 4.4e-114 416.0 530 42.3
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 4.4e-114 416.0 530 42.3
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 4.4e-114 416.0 530 42.3
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.3e-113 414.5 423 51.5
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.7e-113 412.9 530 41.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 4.1e-112 409.5 530 41.3
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.3e-110 403.7 531 41.1
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.5e-109 400.2 535 43.4
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.4e-106 389.8 529 41.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.7e-105 387.5 520 42.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.2e-103 381.3 422 47.6
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.9e-89 332.8 547 38.8
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.4e-88 331.3 513 39.4
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.1e-88 328.9 581 34.6
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 3.9e-86 323.2 487 39.8
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.1e-86 322.8 301 54.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 1.9e-85 320.9 305 52.1
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.4e-82 310.1 330 49.7
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.1e-76 290.8 618 32.2
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 1.4e-75 288.1 281 50.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.4e-72 278.1 414 39.4
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.4e-67 260.8 230 53.0
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-66 258.5 334 44.0
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 2.9e-65 253.8 204 62.7
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 8.1e-60 235.7 567 31.4
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 2.0e-58 231.1 557 30.5
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.2e-49 201.1 562 27.8
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 6.7e-46 189.5 197 45.2
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-44 184.9 393 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 5.3e-43 179.9 556 27.2
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.1e-40 172.2 321 34.6
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 7.9e-39 166.0 310 34.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 6.5e-25 119.8 103 51.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.6e-23 114.0 133 43.6
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 6.1e-23 113.2 110 49.1
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.7e-20 105.1 224 33.9
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.5e-18 97.4 139 39.6
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-17 95.9 296 26.4
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-17 95.5 185 34.6
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-17 95.1 185 34.6
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.5e-16 92.0 123 37.4
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 9.4e-16 89.4 95 45.3
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 6.1e-15 86.7 62 59.7
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.3e-14 84.7 69 63.8
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 7.5e-13 79.7 147 36.1
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 6.3e-12 76.6 285 23.9
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.2e-12 76.3 89 46.1
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 7.7e-10 69.7 178 25.8
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.7e-09 68.6 157 31.2
arahy.Tifrunner.gnm1.ann1.H5KDYL Arachis hypogaea HOM05D001573 ORTHO05D001660 1.9e-08 65.1 316 23.7
arahy.Tifrunner.gnm1.ann1.TYVF6X Arachis hypogaea HOM05D001573 ORTHO05D001660 1.9e-08 65.1 316 23.7
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.2e-08 64.3 59 47.5
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-08 64.3 109 34.9
Glyma.03G134600 Glycine max HOM05D001573 ORTHO05D001660 4.2e-08 63.9 310 23.9
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 5.5e-08 63.5 267 23.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.2e-07 62.4 65 44.6
Lj5g0004050 Lotus japonicus HOM05D001573 ORTHO05D001660 1.2e-07 62.4 317 23.3
Lalb_Chr06g0173461 Lupinus albus HOM05D001573 ORTHO05D001660 3.6e-07 60.8 316 23.1
Atru.chr1.1139 Acer truncatum HOM05D001573 ORTHO05D001660 4.7e-07 60.5 321 23.4
Ca_27319_v3 Cicer arietinum L. HOM05D001573 ORTHO05D001660 4.7e-07 60.5 316 23.4
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.7e-07 60.5 60 46.7
TWI77G0498 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 4.7e-07 60.5 316 22.8
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 6.1e-07 60.1 300 23.3
Prupe.7G055400 Prunus persica HOM05D001573 ORTHO05D001660 6.1e-07 60.1 316 23.1
BraA03t11551Z Brassica rapa HOM05D001573 ORTHO05D001660 8.0e-07 59.7 301 23.6
CANSAT80G1061 Cannabis sativa HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 23.1
CANSAT80G1703 Cannabis sativa HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 23.1
Duzib106G0070 Durio zibethinus HOM05D001573 ORTHO05D001660 8.0e-07 59.7 317 23.0
FvH4_6g24330 Fragaria vesca HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 23.1
FAN05G4302 Fragaria x ananassa HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 23.1
RcHm_v2.0_Chr3g0483261 Rosa chinensis HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 23.1
Sed0001895 Sechium edule HOM05D001573 ORTHO05D001660 8.0e-07 59.7 316 24.1
Gohir.A01G130800 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 59.3 316 23.1
Gohir.D01G119900 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 59.3 316 23.1
Gorai.002G146300 Gossypium raimondii HOM05D001573 ORTHO05D001660 1.0e-06 59.3 316 23.1
Duzib093G2008 Durio zibethinus HOM05D001573 ORTHO05D001660 1.4e-06 58.9 316 23.1
Gohir.A09G121600 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.4e-06 58.9 315 23.2
Gohir.D09G117700 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.4e-06 58.9 315 23.2
Gorai.006G136100 Gossypium raimondii HOM05D001573 ORTHO05D001660 1.4e-06 58.9 315 23.2
Lj1g0002598 Lotus japonicus HOM05D001573 ORTHO05D001660 1.4e-06 58.9 316 23.1
Manes.09G018200 Manihot esculenta HOM05D001573 ORTHO05D001660 1.4e-06 58.9 316 23.7
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.3e-06 58.2 49 63.3
Medtr7g091230 Medicago truncatula HOM05D001573 ORTHO05D001660 3.0e-06 57.8 317 23.0
PGR004G1049 Punica granatum HOM05D001573 ORTHO05D001660 3.0e-06 57.8 316 23.4
TPR.G18260 Trifolium pratense HOM05D001573 ORTHO05D001660 3.0e-06 57.8 317 22.7
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-06 57.4 75 46.7
Sp4g23870 Schrenkiella parvula HOM05D001573 ORTHO05D001660 4.0e-06 57.4 314 23.9
BcaC01g05328 Brassica carinata HOM05D001573 ORTHO05D001660 8.8e-06 56.2 315 23.8
BcaNung04066 Brassica carinata HOM05D001573 ORTHO05D001660 8.8e-06 56.2 314 23.2
Eucgr.A02331 Eucalyptus grandis HOM05D001573 ORTHO05D001660 8.8e-06 56.2 299 23.4
MBI07_g19300_MAGBIO Magnolia biondii HOM05D001573 ORTHO05D001660 8.8e-06 56.2 293 23.9
MD14G1073800 Malus domestica HOM05D001573 ORTHO05D001660 8.8e-06 56.2 300 22.3


User provided reference genes

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