Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 5.1e-128 461.1 231 100.0
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 6.3e-110 401.0 231 84.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.1e-106 390.2 231 82.7
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.1e-105 386.0 236 80.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 3.6e-105 385.2 241 80.1
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 3.0e-104 382.1 231 81.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.4e-103 378.3 231 81.0
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 7.4e-103 377.5 236 78.8
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.3e-102 376.7 231 79.2
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.2e-102 375.9 238 77.3
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 3.7e-102 375.2 231 78.8
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 4.8e-102 374.8 236 78.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 6.3e-102 374.4 225 81.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 6.3e-102 374.4 237 79.3
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 8.2e-102 374.0 234 79.9
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 8.2e-102 374.0 235 77.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.4e-101 373.2 235 79.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 2.4e-101 372.5 222 80.6
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.4e-101 372.5 233 78.5
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.4e-101 372.5 238 76.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.1e-101 372.1 244 76.2
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-101 372.1 232 79.3
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 7.0e-101 370.9 233 79.4
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.5e-100 368.6 233 78.5
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.5e-100 368.6 237 76.4
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 5.9e-100 367.9 236 77.1
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 7.7e-100 367.5 233 77.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 7.7e-100 367.5 230 76.5
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.8e-99 365.2 230 77.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 3.8e-99 365.2 233 77.7
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 3.8e-99 365.2 238 77.7
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 5.0e-99 364.8 237 78.9
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 5.0e-99 364.8 236 76.7
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 8.5e-99 364.0 239 76.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 8.5e-99 364.0 231 76.6
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-98 363.6 240 77.5
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.1e-98 363.6 240 75.0
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.5e-98 362.5 234 78.2
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 7.2e-98 360.9 231 78.4
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.2e-97 360.1 222 78.4
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.2e-97 360.1 232 77.2
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.2e-97 360.1 237 75.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.6e-97 359.8 240 76.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.6e-97 359.8 231 77.9
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 4.7e-97 358.2 232 75.9
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 6.1e-97 357.8 232 77.2
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 8.0e-97 357.5 232 75.9
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.0e-96 357.1 235 74.0
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.4e-96 356.7 232 76.3
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.8e-96 356.3 225 76.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.3e-96 355.9 232 75.0
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 4.0e-96 355.1 237 75.5
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 4.0e-96 355.1 226 76.1
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 8.8e-96 354.0 224 77.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.3e-95 352.1 235 74.9
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 5.7e-95 351.3 233 75.1
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.7e-94 349.7 237 73.8
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 3.7e-94 348.6 236 73.7
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 3.7e-94 348.6 238 73.9
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.8e-94 348.2 231 74.9
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 6.3e-94 347.8 237 73.0
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.3e-94 347.8 231 74.9
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 8.2e-94 347.4 237 73.4
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 8.2e-94 347.4 219 77.6
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-93 346.7 221 76.5
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-93 346.3 237 73.0
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.4e-93 345.9 234 73.1
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 4.1e-93 345.1 235 73.6
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.3e-93 344.7 237 72.6
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 7.0e-93 344.4 244 72.5
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 7.0e-93 344.4 237 72.6
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 9.1e-93 344.0 237 73.0
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 9.1e-93 344.0 237 72.2
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.6e-92 343.2 220 75.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-92 342.8 236 74.6
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.0e-92 342.8 231 74.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 2.0e-92 342.8 231 72.7
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 3.5e-92 342.0 236 73.7
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 3.5e-92 342.0 230 73.9
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 3.5e-92 342.0 235 74.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 5.9e-92 341.3 232 74.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 8.5e-91 337.4 222 74.8
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-90 337.0 236 74.2
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.9e-90 336.3 215 76.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.2e-90 335.5 242 69.0
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 5.5e-90 334.7 222 74.8
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.6e-89 332.0 232 69.8
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 6.1e-89 331.3 234 69.7
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.0e-88 328.6 233 71.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.0e-88 328.6 224 71.9
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 5.2e-88 328.2 234 71.4
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 5.7e-87 324.7 219 74.4
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 3.5e-84 315.5 232 67.7
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 5.9e-84 314.7 243 67.5
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.5e-82 310.1 233 65.7
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.5e-82 309.3 235 65.1
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 4.2e-82 308.5 230 68.3
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.8e-80 303.1 215 70.2
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.6e-79 299.3 211 69.2
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 7.5e-79 297.7 238 64.7
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-73 279.3 230 63.5
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 3.0e-72 275.8 203 69.5
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-71 272.3 230 62.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 2.0e-68 263.1 236 55.9
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 6.0e-68 261.5 240 55.8
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.0e-67 259.2 215 60.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 3.9e-67 258.8 203 65.5
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 3.9e-67 258.8 203 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 6.6e-67 258.1 214 59.3
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 5.6e-66 255.0 178 71.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 4.7e-65 251.9 153 83.0
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 8.9e-64 247.7 221 55.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.2e-63 247.3 207 59.4
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.8e-63 245.0 214 57.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 3.2e-61 239.2 218 61.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 5.4e-61 238.4 145 80.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 9.2e-61 237.7 206 60.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 9.2e-61 237.7 214 55.1
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.0e-59 234.2 164 72.0
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.0e-56 222.2 167 65.3
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 9.2e-53 211.1 146 69.9
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-38 163.7 186 49.5
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-38 163.7 118 67.8
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.0e-35 154.5 204 45.6
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 6.2e-33 145.2 214 39.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.3e-32 142.1 111 64.0
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.8e-27 127.1 208 33.2
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.6e-23 113.2 82 62.2
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 9.9e-23 111.3 65 78.5
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 7.9e-20 101.7 70 67.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-14 84.3 47 80.9
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.9e-14 83.2 81 59.3
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 8.4e-14 81.6 52 76.9
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 4.2e-13 79.3 78 57.7
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 6.0e-12 75.5 48 77.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 1.5e-10 70.9 45 77.8
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 9.7e-10 68.2 36 86.1
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.1e-08 64.7 70 52.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.1e-08 62.8 48 62.5


User provided reference genes

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