Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.1e-133 479.2 268 100.0
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 4.4e-99 365.2 242 87.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 9.9e-99 364.0 242 80.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.9e-98 361.7 242 86.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.4e-97 360.1 242 86.4
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.4e-97 359.4 242 86.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 5.4e-97 358.2 228 89.9
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.6e-96 356.7 242 86.0
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-95 353.6 241 78.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.7e-95 353.2 242 84.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 8.7e-95 350.9 242 85.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.5e-94 350.1 243 76.1
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.9e-94 349.7 243 81.9
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 5.6e-94 348.2 242 82.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 9.6e-94 347.4 243 80.2
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.6e-93 346.7 242 78.9
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.1e-93 346.3 243 79.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.8e-93 345.9 242 75.6
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.8e-93 345.9 241 80.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 6.2e-93 344.7 242 83.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 8.1e-93 344.4 241 82.6
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 8.1e-93 344.4 242 81.8
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.1e-92 344.0 242 83.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.1e-92 344.0 242 82.2
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-92 343.6 243 79.4
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.0e-92 342.0 237 76.8
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.3e-92 341.7 243 78.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.2e-91 340.5 242 78.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.2e-91 340.5 241 81.7
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.2e-91 340.5 241 80.9
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.5e-91 340.1 242 81.0
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.0e-91 339.7 242 83.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.4e-91 338.6 240 81.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.8e-91 338.2 228 87.7
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 5.8e-91 338.2 241 80.5
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 7.6e-91 337.8 242 81.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 9.9e-91 337.4 243 72.8
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.9e-91 337.4 238 82.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 9.9e-91 337.4 246 74.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.7e-90 336.7 241 79.3
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.9e-90 335.9 242 74.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.8e-90 335.5 241 80.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.8e-90 335.5 241 80.1
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.8e-90 335.5 243 79.4
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.9e-90 335.1 242 74.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.9e-90 335.1 243 77.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 8.4e-90 334.3 241 79.3
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.4e-89 333.6 242 75.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.4e-89 333.6 242 81.4
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.9e-89 333.2 242 81.0
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.4e-89 332.8 242 78.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 3.2e-89 332.4 242 81.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.2e-89 332.4 241 79.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.2e-89 332.0 242 79.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 7.1e-89 331.3 249 73.1
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 9.3e-89 330.9 206 82.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 9.3e-89 330.9 207 82.1
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 9.3e-89 330.9 242 73.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 9.3e-89 330.9 241 72.6
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.6e-88 330.1 242 74.0
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.1e-88 329.7 242 74.0
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.1e-88 329.7 241 78.4
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.7e-88 329.3 210 91.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-88 329.3 243 74.5
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.7e-88 329.3 240 72.9
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.5e-88 328.9 242 78.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.6e-88 328.6 241 80.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.0e-87 327.4 242 79.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-87 327.4 243 74.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-87 327.4 243 78.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.3e-87 327.0 243 74.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.3e-87 327.0 199 85.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.3e-87 326.2 233 79.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-87 326.2 243 75.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.0e-87 325.9 242 81.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.0e-87 325.9 243 77.4
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 5.1e-87 325.1 241 79.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.1e-87 325.1 243 73.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.1e-87 325.1 243 74.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 6.6e-87 324.7 243 74.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-86 322.8 243 73.3
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.5e-86 322.8 242 74.8
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.3e-85 320.5 241 78.0
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.3e-85 320.5 240 70.8
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.3e-85 320.5 236 77.5
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.3e-85 320.5 199 84.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.3e-85 320.5 252 71.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.6e-85 318.9 249 69.5
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.4e-84 317.0 245 77.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.4e-84 316.2 206 79.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.9e-84 314.7 209 79.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.2e-83 313.9 243 76.1
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.5e-83 313.5 205 80.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.4e-83 312.4 241 68.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.3e-82 310.5 201 81.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.4e-82 308.1 194 83.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 8.4e-82 307.8 241 68.9
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.9e-81 306.6 241 68.0
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.4e-81 306.2 227 74.4
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 9.3e-81 304.3 205 77.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.1e-80 303.1 244 73.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 6.0e-80 301.6 229 74.2
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.9e-80 301.2 244 71.7
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.0e-79 299.3 243 72.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.9e-79 298.9 241 74.3
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.1e-79 298.5 244 66.0
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.5e-78 297.0 208 76.0
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-78 296.2 208 75.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.5e-78 296.2 243 71.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 3.3e-78 295.8 244 65.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 7.4e-78 294.7 244 66.0
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 9.6e-78 294.3 244 65.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.3e-77 293.9 244 64.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.3e-77 293.9 208 73.6
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.8e-76 290.0 244 64.8
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.1e-76 289.3 183 83.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 7.6e-75 284.6 209 70.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 7.6e-75 284.6 209 70.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.8e-74 282.3 209 70.3
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.8e-74 282.3 209 70.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.5e-70 270.4 178 77.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.3e-69 267.3 193 72.0
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.7e-69 265.8 246 58.1
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 8.2e-69 264.6 227 62.1
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.7e-61 239.2 193 64.2
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.4e-59 232.6 191 67.0
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.1e-57 227.6 157 75.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.2e-57 225.7 257 53.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.5e-57 225.3 206 63.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.8e-50 202.6 170 67.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.4e-47 194.1 133 75.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.6e-43 179.9 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-42 177.2 206 54.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 8.0e-40 168.3 176 51.7
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 5.7e-38 162.2 173 51.4
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.2e-33 146.4 105 69.5
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.4e-28 130.2 185 41.6
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.4e-28 130.2 131 57.3
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-25 120.6 86 65.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.8e-21 105.9 91 75.8
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.5e-17 92.4 192 30.7
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-16 90.9 90 61.1
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 8.9e-15 85.1 65 70.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.0e-11 73.9 179 30.7
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 6.8e-07 58.9 81 48.1


User provided reference genes

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