Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.5e-124 449.5 221 100.0
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.6e-105 385.6 221 83.3
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 1.4e-103 379.8 238 77.3
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 2.4e-103 379.0 221 81.4
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.6e-102 376.3 220 80.5
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.6e-102 376.3 220 80.5
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 6.0e-102 374.4 221 79.2
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 6.0e-102 374.4 221 80.1
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 7.9e-102 374.0 220 81.4
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 1.0e-101 373.6 221 80.1
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 1.3e-101 373.2 221 79.6
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.8e-101 372.9 221 79.2
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 3.9e-101 371.7 220 80.9
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 5.1e-101 371.3 221 78.7
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 5.1e-101 371.3 221 80.1
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.5e-100 369.8 221 79.6
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 1.9e-100 369.4 231 76.2
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 4.3e-100 368.2 221 77.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 2.1e-99 365.9 221 80.5
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 2.8e-99 365.5 220 78.2
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 3.7e-99 365.2 221 78.3
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 1.1e-98 363.6 221 77.8
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 3.1e-98 362.1 221 75.1
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 9.0e-98 360.5 221 76.0
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.2e-97 360.1 221 78.7
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 3.4e-97 358.6 221 78.7
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 1.7e-96 356.3 221 73.3
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 2.9e-96 355.5 221 76.5
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.8e-96 355.1 221 76.5
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 3.2e-95 352.1 221 74.2
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 3.2e-95 352.1 219 77.2
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.2e-95 351.7 219 77.2
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 7.1e-95 350.9 221 75.6
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 9.3e-95 350.5 221 75.6
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 2.1e-94 349.4 221 75.1
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 2.1e-94 349.4 221 75.1
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 4.6e-94 348.2 221 71.5
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 6.0e-94 347.8 221 75.6
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 6.0e-94 347.8 221 72.9
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 1.3e-93 346.7 221 76.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 8.7e-93 344.0 221 71.9
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.1e-92 343.6 236 72.0
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 1.9e-92 342.8 221 72.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 2.8e-91 339.0 221 72.9
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 8.2e-91 337.4 221 69.2
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.1e-90 337.0 218 71.6
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.4e-90 336.7 206 80.1
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 2.4e-90 335.9 221 71.5
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 3.1e-90 335.5 221 72.4
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 3.1e-90 335.5 221 71.9
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 3.1e-90 335.5 221 72.4
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 5.3e-90 334.7 221 71.5
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 5.3e-90 334.7 221 70.6
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 6.9e-90 334.3 221 73.3
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 9.0e-90 334.0 221 71.5
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.2e-89 333.6 221 71.5
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 1.5e-89 333.2 221 70.6
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 2.0e-89 332.8 235 69.4
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.0e-89 332.8 219 70.8
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 7.6e-89 330.9 221 71.0
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.7e-88 329.7 221 69.2
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 2.2e-88 329.3 221 71.9
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.9e-88 328.9 221 70.1
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.4e-87 326.6 219 72.1
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 2.5e-87 325.9 257 65.8
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 5.5e-87 324.7 228 69.7
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 7.2e-87 324.3 220 71.8
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 7.2e-87 324.3 274 60.6
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 2.7e-86 322.4 221 71.9
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 6.1e-86 321.2 221 71.9
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 3.0e-85 318.9 221 69.7
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 5.1e-85 318.2 221 69.7
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.1e-84 317.0 221 67.4
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.5e-84 316.6 221 68.8
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 3.3e-84 315.5 221 71.9
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 7.4e-84 314.3 221 67.0
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 2.2e-83 312.8 221 68.3
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 4.8e-83 311.6 221 67.0
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 3.1e-82 308.9 221 67.0
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 2.0e-81 306.2 222 69.8
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.1e-79 300.4 221 66.1
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.4e-79 300.1 239 63.2
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 7.2e-79 297.7 202 69.3
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.2e-78 297.0 206 70.4
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 2.7e-78 295.8 221 64.3
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 7.4e-76 287.7 221 65.6
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 2.8e-75 285.8 216 63.4
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 4.8e-75 285.0 216 63.9
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 9.1e-74 280.8 172 75.0
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 3.4e-73 278.9 176 71.6
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 6.5e-72 274.6 199 65.3
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 6.5e-72 274.6 248 59.7
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 7.2e-71 271.2 207 68.1
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 9.4e-71 270.8 207 64.3
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 9.4e-71 270.8 207 64.3
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.1e-70 269.6 206 68.0
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 3.9e-69 265.4 211 63.0
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 2.0e-68 263.1 172 70.9
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.8e-67 259.2 230 58.7
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 3.7e-67 258.8 198 64.6
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.1e-66 257.3 201 61.2
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.0e-64 250.8 275 53.8
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 1.8e-61 240.0 158 73.4
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 3.7e-59 232.3 147 73.5
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.1e-58 230.7 143 75.5
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 4.1e-58 228.8 218 56.4
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.9e-55 219.9 221 56.1
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 7.2e-55 218.0 161 70.2
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 4.4e-52 208.8 121 80.2
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 5.7e-52 208.4 129 71.3
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 5.0e-48 195.3 170 58.8
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 2.5e-47 193.0 124 72.6
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 4.4e-44 182.2 121 72.7
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.3e-37 159.8 130 60.8
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-36 157.5 143 55.9
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 4.1e-34 149.1 210 37.1
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 3.7e-27 125.9 204 32.4
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 3.5e-25 119.4 106 52.8
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 1.1e-23 114.4 79 67.1
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 2.4e-18 96.7 67 64.2
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.0e-12 77.0 43 81.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 2.1e-09 67.0 84 44.0
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 1.1e-07 61.2 76 46.1


User provided reference genes

Program Settings