Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 4.7e-203 712.2 853 100.0
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 9.4e-119 432.2 842 75.8
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.6e-118 430.3 853 81.8
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.5e-116 424.9 818 85.9
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.8e-114 417.9 830 81.9
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 3.1e-114 417.2 839 84.0
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 1.2e-113 415.2 822 78.5
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 2.6e-113 414.1 827 85.5
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.5e-113 413.7 832 82.6
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 1.6e-110 404.8 830 83.6
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.7e-110 404.1 812 85.2
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 1.0e-109 402.1 819 77.0
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 2.2e-107 394.4 795 83.0
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 3.7e-107 393.7 819 83.0
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.2e-105 388.7 807 78.6
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 4.2e-103 380.2 819 83.9
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.2e-102 378.6 823 77.0
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.6e-102 378.3 813 84.0
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 3.6e-102 377.1 818 83.6
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.0e-101 375.6 806 84.1
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.4e-101 375.2 821 83.4
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.3e-101 374.4 832 76.1
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 5.2e-101 373.2 807 83.5
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 8.8e-101 372.5 821 82.1
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.5e-100 371.7 828 81.3
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 2.0e-100 371.3 814 83.3
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 5.7e-100 369.8 811 83.0
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 9.8e-100 369.0 788 75.4
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 2.8e-99 367.5 829 82.0
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 8.3e-99 365.9 825 72.2
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.4e-98 365.2 858 79.6
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 2.4e-98 364.4 803 84.2
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 5.4e-98 363.2 847 74.7
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.6e-97 361.7 858 79.6
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 1.0e-96 359.0 844 69.8
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 2.3e-96 357.8 810 83.5
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 2.3e-96 357.8 812 82.1
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 6.6e-96 356.3 821 72.7
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 2.5e-95 354.4 803 82.8
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 3.3e-95 354.0 831 68.2
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 4.2e-95 353.6 893 68.3
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 5.2e-93 346.7 743 64.5
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.2e-92 345.5 833 64.1
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 4.4e-92 343.6 800 83.0
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 3.7e-91 340.5 802 66.5
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-90 339.0 907 53.6
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 3.2e-90 337.4 764 83.8
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 9.2e-90 335.9 824 81.6
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.2e-89 335.5 838 64.6
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 3.9e-88 330.5 857 63.4
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 3.3e-87 327.4 789 76.3
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 7.3e-87 326.2 826 69.6
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 1.2e-84 318.9 797 75.0
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 1.5e-84 318.5 812 80.5
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 3.4e-84 317.4 800 80.8
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 4.4e-84 317.0 846 69.5
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 2.9e-83 314.3 751 83.5
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 2.9e-83 314.3 791 80.0
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 8.3e-83 312.8 802 80.5
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 1.1e-82 312.4 802 81.7
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 2.7e-81 307.8 783 74.3
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 3.5e-81 307.4 794 80.7
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 8.6e-80 302.8 799 78.2
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 5.6e-79 300.1 783 65.3
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.6e-78 298.5 816 71.1
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.6e-78 298.5 368 79.9
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 2.1e-78 298.1 819 79.1
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 1.2e-76 292.4 825 70.9
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 8.3e-75 286.2 748 83.7
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 2.7e-73 281.2 785 64.8
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.1e-72 276.9 373 75.3
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 6.6e-72 276.6 786 70.4
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.5e-71 275.4 786 64.1
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.5e-71 275.4 786 64.1
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 1.9e-71 275.0 324 83.6
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 1.9e-71 275.0 367 77.9
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.6e-70 271.9 170 75.3
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 2.8e-70 271.2 360 58.3
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 6.2e-70 270.0 338 79.6
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.3e-67 262.3 201 64.2
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 4.9e-67 260.4 793 62.2
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 6.4e-67 260.0 821 72.7
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 8.4e-67 259.6 148 77.7
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.7e-64 251.9 777 78.5
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.9e-63 248.4 702 88.2
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.0e-61 240.7 339 75.5
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.2e-60 239.2 354 74.3
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 3.4e-60 237.7 161 71.4
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 5.8e-60 236.9 166 70.5
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 2.4e-58 231.5 163 66.9
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 7.8e-57 226.5 184 62.5
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 7.8e-57 226.5 194 60.8
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.3e-56 224.9 184 62.5
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.6e-54 218.8 156 69.9
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 2.8e-54 218.0 720 82.2
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.6e-54 217.6 156 69.2
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 9.0e-53 213.0 167 61.1
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 4.2e-50 204.1 160 58.1
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 7.9e-49 199.9 171 58.5
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 5.1e-48 197.2 148 64.9
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.9e-47 195.3 587 37.5
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.9e-47 195.3 140 72.1
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 7.4e-47 193.4 159 54.1
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 7.4e-39 166.8 130 60.0
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 7.4e-39 166.8 122 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 6.2e-38 163.7 123 61.0
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.4e-36 157.9 115 62.6
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 1.6e-33 149.1 140 45.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 4.6e-33 147.5 119 59.7
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 7.9e-33 146.7 113 61.1
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.3e-32 146.0 114 64.0
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 2.8e-30 138.3 116 56.0
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.0e-27 129.8 67 83.6
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.0e-27 129.8 89 69.7
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 7.2e-26 123.6 239 62.8
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 9.3e-26 123.2 85 63.5
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 6.1e-25 120.6 88 61.4
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.3e-24 119.4 85 64.7
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 3.0e-24 118.2 100 53.0
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 3.1e-21 108.2 113 50.4
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.5e-20 105.9 86 57.0
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 8.8e-16 90.1 115 48.7
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.1e-15 89.7 68 58.8
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.9e-10 72.4 45 66.7


User provided reference genes

Program Settings