Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1929.8 952 100.0
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1320.8 969 68.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1260.0 954 67.3
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1236.9 998 64.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1234.9 951 66.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1225.3 963 66.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1216.4 898 68.0
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1213.7 951 64.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1201.0 1006 63.6
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1195.3 988 63.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1189.1 913 65.3
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1187.2 1006 62.8
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1186.4 955 65.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1177.5 1037 60.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1171.0 969 64.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1170.2 951 64.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1164.1 986 62.2
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1163.3 977 62.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1161.7 956 63.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1157.1 957 62.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 0.0e+00 1152.9 1089 57.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1150.2 978 62.0
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1149.0 958 63.2
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1149.0 986 61.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1140.6 953 61.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1132.5 958 61.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 0.0e+00 1132.1 745 74.4
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1127.9 967 61.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1121.7 980 59.4
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1117.8 955 61.4
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 0.0e+00 1114.8 960 60.2
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1111.7 989 60.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1107.0 980 59.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 0.0e+00 1100.9 955 61.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 0.0e+00 1094.3 957 60.1
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1089.3 969 59.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 0.0e+00 1088.9 987 57.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1082.8 973 58.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 0.0e+00 1078.5 958 59.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 0.0e+00 1077.4 975 58.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 6.5e-312 1074.7 977 57.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.5e-312 1073.5 1000 57.5
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.3e-310 1069.7 1000 57.6
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.9e-310 1068.5 953 58.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.4e-310 1067.0 951 60.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.4e-309 1066.2 964 59.1
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 6.0e-308 1060.8 963 59.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.0e-304 1048.1 957 58.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 4.0e-304 1048.1 918 60.1
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 9.9e-303 1043.5 1012 56.4
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.9e-302 1042.0 1000 57.0
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.9e-301 1039.3 964 57.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 4.2e-301 1038.1 963 57.6
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.8e-299 1032.7 753 68.0
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.1e-298 1030.0 969 57.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 5.6e-298 1027.7 958 58.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.4e-296 1022.3 980 56.0
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 7.6e-295 1017.3 970 56.3
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.3e-294 1016.5 961 57.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.4e-293 1013.1 923 58.8
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.0e-292 1007.7 977 54.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 6.7e-291 1004.2 957 57.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.9e-290 1002.7 960 56.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 6.3e-289 997.7 813 64.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 8.2e-289 997.3 954 56.4
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.2e-286 989.2 951 56.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.9e-286 988.8 950 55.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.4e-285 986.5 988 55.8
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 3.6e-284 981.9 983 55.1
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 8.8e-283 977.2 953 55.6
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.7e-281 973.0 990 53.8
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.0e-279 966.1 967 54.1
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 7.7e-279 964.1 966 53.8
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.0e-278 963.8 983 53.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 6.5e-278 961.1 967 54.4
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.2e-277 958.4 934 56.9
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 7.2e-277 957.6 972 52.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 7.2e-277 957.6 969 55.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.0e-275 953.7 688 68.6
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 2.0e-274 949.5 1019 52.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.2e-273 946.0 893 55.9
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.6e-271 939.1 958 52.8
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.7e-268 929.1 972 51.2
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.0e-256 887.9 963 50.4
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 6.3e-241 838.2 732 61.3
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 8.3e-241 837.8 743 60.4
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 5.9e-239 831.6 703 60.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.1e-237 827.4 527 76.7
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.1e-229 800.8 571 68.3
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.3e-229 799.3 957 48.9
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.0e-222 777.7 554 69.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 7.3e-221 771.5 972 46.5
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.1e-220 770.0 460 80.0
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 8.9e-219 764.6 805 53.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.1e-205 721.1 482 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 9.6e-205 718.0 1035 40.8
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.8e-196 689.9 1145 38.1
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-187 660.2 961 40.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.6e-186 656.8 917 41.8
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.5e-170 604.4 1018 39.7
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.0e-165 587.4 605 51.2
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-164 584.7 717 44.8
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-160 570.1 827 40.5
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.7e-156 556.6 486 59.9
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-155 554.7 443 66.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-155 554.7 443 66.1
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-147 528.1 738 41.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.1e-143 512.7 960 35.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.1e-139 500.4 313 76.0
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.7e-138 497.3 278 84.2
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.5e-136 489.6 480 52.3
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 6.8e-134 482.6 439 58.1
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-130 471.9 687 40.9
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.0e-126 458.8 630 46.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 6.4e-124 449.5 360 64.2
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-123 447.6 609 42.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-111 408.7 315 67.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.8e-102 378.3 397 52.4
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-101 372.9 772 34.3
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-99 367.5 745 33.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-94 352.4 899 32.0
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.2e-93 349.0 460 45.9
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.3e-86 323.6 401 43.9
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.7e-84 318.5 408 46.3
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.1e-80 305.8 644 33.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 3.2e-75 287.7 159 82.4
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 4.6e-66 257.3 270 50.4
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.3e-64 250.8 139 82.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.1e-62 244.6 379 40.9
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.2e-53 216.1 542 31.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-52 210.7 190 53.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 4.6e-50 204.1 145 72.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.8e-49 202.2 164 63.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.3e-47 196.1 720 26.8
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.7e-47 195.7 205 56.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.9e-45 187.2 159 54.1
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.9e-44 184.9 259 44.4
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.1e-43 183.0 111 77.5
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 7.2e-43 180.3 639 27.5
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.0e-41 176.4 154 60.4
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 3.3e-40 171.4 106 79.2
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 6.1e-34 150.6 270 32.2
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.5e-32 146.0 174 51.1
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.5e-32 143.7 675 24.6
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 7.7e-29 133.7 89 67.4
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.0e-28 133.3 128 56.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.3e-28 132.9 86 69.8
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.7e-26 125.2 84 71.4
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-25 122.9 83 75.9
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 9.1e-22 110.2 106 52.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.5e-21 108.2 78 67.9
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 7.5e-16 90.5 95 53.7
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.0e-12 80.1 64 59.4
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 1.0e-09 70.1 94 41.5
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 5.2e-09 67.8 78 46.2
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-08 66.6 71 47.9
Dinv31046 Davidia involucrata HOM05D050287 ORTHO05D005784 1.7e-07 62.8 62 53.2
Dinv31054 Davidia involucrata HOM05D050287 ORTHO05D005784 1.7e-07 62.8 62 53.2
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 4.1e-06 58.2 125 35.2


User provided reference genes

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