Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.4e-193 679.5 343 100.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 8.6e-156 553.9 339 83.8
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.5e-155 553.1 339 83.2
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 1.2e-154 550.1 315 86.3
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 2.1e-154 549.3 332 83.1
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.4e-153 546.6 341 82.4
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 6.8e-153 544.3 333 81.4
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 3.4e-152 542.0 315 85.4
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 4.4e-152 541.6 325 83.1
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 9.9e-152 540.4 308 86.4
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 9.9e-152 540.4 327 82.9
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 9.9e-152 540.4 338 80.8
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.3e-151 540.0 338 80.8
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 6.4e-151 537.7 308 85.4
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 1.1e-150 537.0 308 86.4
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.2e-150 535.4 341 80.9
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 9.2e-150 533.9 307 85.7
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 9.2e-150 533.9 310 84.8
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 9.2e-150 533.9 310 84.8
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 1.2e-149 533.5 335 80.6
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.6e-149 533.1 308 85.1
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 2.7e-149 532.3 310 83.9
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 4.6e-149 531.6 314 83.1
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 6.0e-149 531.2 333 79.9
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.3e-148 530.0 308 85.1
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 3.9e-148 528.5 359 76.0
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 6.6e-148 527.7 308 84.7
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 8.6e-148 527.3 310 84.2
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 1.9e-147 526.2 308 84.7
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 1.9e-147 526.2 321 81.0
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 3.3e-147 525.4 315 82.9
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 3.3e-147 525.4 319 82.4
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 4.3e-147 525.0 313 82.4
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 5.6e-147 524.6 340 77.9
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 7.3e-147 524.2 305 84.6
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 1.2e-146 523.5 313 82.1
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 1.6e-146 523.1 308 83.1
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 2.1e-146 522.7 310 83.2
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 2.1e-146 522.7 306 85.0
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.8e-146 522.3 316 82.0
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 4.7e-146 521.5 310 82.6
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 6.2e-146 521.2 329 79.3
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.1e-145 520.4 306 83.3
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 1.8e-145 519.6 306 83.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.8e-145 519.6 308 83.4
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.4e-145 519.2 310 82.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 3.1e-145 518.8 310 82.6
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 3.1e-145 518.8 314 81.8
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 3.1e-145 518.8 323 79.6
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.0e-144 516.2 308 81.5
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 3.4e-144 515.4 315 82.5
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 4.4e-144 515.0 316 81.0
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 4.4e-144 515.0 315 82.2
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 1.3e-143 513.5 310 81.6
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.3e-143 513.5 313 81.8
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.7e-143 513.1 308 83.1
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.2e-143 512.7 315 80.3
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 6.4e-143 511.1 358 75.1
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 3.2e-142 508.8 315 80.0
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 5.4e-142 508.1 328 79.0
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 1.2e-141 506.9 310 81.3
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-139 499.6 373 70.8
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 5.6e-139 498.0 307 80.5
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 5.3e-137 491.5 333 76.3
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 5.3e-137 491.5 308 77.9
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 9.9e-136 487.3 307 79.5
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 9.9e-136 487.3 308 80.2
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.3e-135 486.9 310 76.1
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 3.8e-135 485.3 308 79.9
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.6e-133 479.9 330 75.2
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 3.0e-132 475.7 310 77.7
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.9e-131 473.0 315 76.5
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 5.6e-131 471.5 352 71.9
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.6e-130 469.9 351 68.9
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.6e-130 468.8 311 77.2
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.4e-129 466.1 341 71.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 6.9e-129 464.5 283 83.7
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.2e-128 463.8 498 54.6
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 2.4e-126 456.1 314 75.2
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 2.4e-126 456.1 299 74.9
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.4e-126 454.9 306 75.5
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 5.4e-126 454.9 335 71.3
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 7.1e-126 454.5 321 74.1
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.4e-121 440.3 288 77.8
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 4.0e-121 438.7 259 83.0
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 7.6e-120 434.5 418 57.7
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 2.2e-119 433.0 309 74.4
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 7.9e-117 424.5 308 69.5
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 2.5e-115 419.5 298 73.8
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.6e-114 416.8 304 69.1
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 4.0e-113 412.1 243 84.4
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 9.0e-113 411.0 252 80.2
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 3.4e-112 409.1 312 65.7
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 7.6e-112 407.9 285 71.9
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.7e-111 406.8 305 66.9
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 2.2e-111 406.4 310 68.4
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-111 406.4 305 71.1
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 4.6e-109 398.7 260 76.9
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 2.9e-103 379.4 296 64.2
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.1e-99 367.5 255 72.9
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 2.0e-99 366.7 219 81.7
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 1.3e-98 364.0 260 68.5
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 6.9e-97 358.2 244 74.2
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.5e-91 340.5 209 80.4
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.0e-91 340.1 226 72.6
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.2e-90 336.7 313 59.4
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 5.3e-89 332.0 299 56.5
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 2.9e-87 326.2 310 58.1
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 5.2e-76 288.9 175 79.4
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 3.4e-75 286.2 182 75.3
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.7e-72 276.6 302 50.3
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 1.2e-67 261.2 227 65.6
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.2e-66 256.9 158 79.7
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.3e-63 246.9 176 69.3
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-62 243.8 490 35.3
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 5.2e-60 235.7 157 75.8
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 9.2e-57 224.9 144 76.4
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 1.1e-54 218.0 120 87.5
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.5e-54 216.9 119 89.9
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.2e-48 198.0 228 49.6
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.7e-47 194.1 111 82.0
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 3.6e-45 186.4 270 37.8
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 4.7e-37 159.5 99 77.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 3.9e-31 139.8 290 32.1
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 7.6e-27 125.6 66 90.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.3e-26 124.8 325 27.7
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-25 120.9 61 96.7
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 9.3e-25 118.6 70 85.7
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.6e-24 117.9 59 96.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 6.6e-23 112.5 63 88.9
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 6.6e-23 112.5 63 90.5
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.1e-21 107.5 70 75.7
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 2.9e-18 97.1 66 75.8
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.1e-12 78.6 43 86.0
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 6.9e-12 75.9 60 63.3
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-10 70.9 33 93.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.3e-07 61.6 90 38.9
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.1e-07 59.7 129 29.5
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 6.7e-07 59.3 99 32.3
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.7e-07 59.3 99 32.3
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.7e-07 59.3 99 32.3
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 6.7e-07 59.3 55 56.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 8.7e-07 58.9 90 37.8
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.5e-06 58.2 102 35.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.5e-06 58.2 110 32.7
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.9e-06 57.8 119 32.8
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.5e-06 57.4 99 31.3
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.3e-06 57.0 90 37.8
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 3.3e-06 57.0 90 37.8
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 3.3e-06 57.0 221 25.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 4.3e-06 56.6 90 36.7
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.3e-06 56.6 90 36.7
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 5.6e-06 56.2 111 30.6
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 5.6e-06 56.2 98 33.7
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 5.6e-06 56.2 111 32.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 7.4e-06 55.8 90 36.7
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 7.4e-06 55.8 90 35.6
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 7.4e-06 55.8 90 34.4
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 9.6e-06 55.5 90 33.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 9.6e-06 55.5 90 33.3
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 9.6e-06 55.5 102 32.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 9.6e-06 55.5 90 34.4


User provided reference genes

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