Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.9e-299 1030.4 536 100.0
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-238 829.7 540 78.7
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.8e-185 652.5 538 61.0
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 7.1e-181 637.9 536 58.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.2e-169 598.2 540 57.6
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 8.1e-169 597.8 537 56.6
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 9.0e-168 594.3 542 55.4
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 9.9e-167 590.9 537 57.0
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.9e-166 588.6 545 57.2
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 6.4e-166 588.2 538 55.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 8.4e-166 587.8 542 55.5
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.2e-165 585.9 541 54.3
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.2e-164 583.9 544 55.9
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 7.9e-164 581.3 546 54.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.3e-163 580.5 541 54.3
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.1e-163 578.6 546 53.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.1e-160 569.3 542 55.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.4e-159 565.8 538 53.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 5.8e-159 565.1 533 53.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.7e-158 563.5 536 55.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.7e-158 563.5 541 53.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.9e-157 560.1 545 54.3
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.2e-157 558.9 539 53.4
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 5.5e-157 558.5 532 52.3
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.8e-155 553.5 541 52.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.8e-155 553.5 533 53.8
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.1e-154 550.8 540 53.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 4.3e-154 548.9 533 51.8
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.6e-153 547.0 540 52.8
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.6e-153 547.0 533 53.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 6.3e-153 545.0 544 52.8
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 3.1e-152 542.7 533 52.5
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.2e-151 540.8 535 54.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.5e-151 540.4 530 51.9
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.6e-151 539.7 545 52.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.2e-150 536.6 538 51.1
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 7.2e-149 531.6 545 51.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 6.7e-147 525.0 542 50.7
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.7e-147 524.6 534 49.6
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.1e-146 524.2 547 51.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.5e-146 523.9 539 49.9
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.6e-145 520.4 545 50.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 4.8e-145 518.8 544 50.7
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.8e-144 516.9 536 50.6
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.4e-144 516.5 531 49.5
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.1e-144 516.2 546 50.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.6e-143 513.1 541 52.3
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.3e-142 510.8 545 50.8
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.7e-142 510.4 542 47.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.9e-142 509.6 534 50.9
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.8e-142 509.2 537 54.6
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 5.0e-142 508.8 534 50.9
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.5e-142 508.4 543 49.9
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.5e-141 505.4 542 47.0
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 7.2e-141 505.0 540 47.4
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.6e-140 503.8 548 48.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 6.1e-140 501.9 547 49.9
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 5.1e-139 498.8 547 45.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-138 497.7 528 50.6
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.3e-138 496.1 532 49.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 5.7e-138 495.4 531 50.3
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.2e-137 493.4 537 47.3
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.8e-137 493.0 541 47.9
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 3.7e-137 492.7 532 49.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-136 490.7 532 49.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.5e-135 487.3 553 45.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.4e-135 486.1 527 49.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.9e-135 485.3 527 49.1
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 2.9e-134 483.0 540 46.9
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 9.4e-133 478.0 455 53.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.3e-129 467.6 534 47.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-129 467.2 541 46.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 4.8e-129 465.7 534 47.4
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 3.1e-128 463.0 537 45.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 5.9e-127 458.8 533 46.2
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-126 457.2 536 46.1
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.2e-125 453.0 555 46.7
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 5.5e-125 452.2 531 45.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 6.1e-124 448.7 532 45.7
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.1e-124 448.7 555 45.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 2.6e-122 443.4 542 44.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 7.5e-122 441.8 451 53.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.3e-121 441.0 545 44.0
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 7.7e-119 431.8 541 44.0
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.0e-118 431.4 541 42.5
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.0e-118 431.4 537 43.6
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.9e-117 427.2 589 43.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 4.2e-117 426.0 553 44.5
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.2e-114 417.9 535 43.9
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 7.5e-114 415.2 420 54.3
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 6.3e-113 412.1 541 43.6
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.7e-111 406.8 530 43.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.3e-110 404.4 538 42.2
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.3e-110 404.4 538 43.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.8e-110 402.9 529 43.1
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-109 400.6 529 42.7
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.9e-109 400.6 529 42.7
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.9e-109 400.6 529 42.7
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.5e-106 388.7 519 43.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.5e-101 373.6 532 40.0
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 8.9e-99 365.2 480 40.8
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 5.9e-95 352.4 489 41.3
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.3e-94 350.5 582 38.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.4e-90 336.7 512 38.7
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.2e-89 334.0 289 55.4
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 6.0e-87 325.9 542 36.2
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.4e-83 314.7 337 51.6
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 5.2e-83 312.8 618 33.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 7.8e-79 298.9 228 60.5
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 7.3e-77 292.4 282 49.6
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-73 281.2 303 49.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 6.0e-71 272.7 541 34.2
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.1e-67 261.9 411 40.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 6.4e-65 252.7 325 43.4
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.2e-63 248.4 572 32.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 6.2e-60 236.1 565 30.3
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 8.7e-54 215.7 545 28.4
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.0e-46 190.7 197 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 4.0e-43 180.3 565 26.2
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 2.0e-42 177.9 312 33.3
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 5.7e-37 159.8 417 29.3
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 9.0e-35 152.5 304 33.6
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-27 128.3 105 57.1
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 5.0e-25 120.2 127 50.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 8.5e-25 119.4 208 36.5
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 8.2e-20 102.8 125 44.0
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.2e-18 99.0 95 45.3
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.2e-17 94.7 111 48.6
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.5e-17 93.2 207 32.9
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-14 85.9 89 46.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 5.7e-13 80.1 294 25.9
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 2.8e-12 77.8 62 50.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 3.7e-12 77.4 155 35.5
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.7e-12 77.4 101 41.6
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.8e-11 75.1 69 55.1
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 5.9e-10 70.1 151 33.8
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.3e-09 68.9 184 22.8
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-08 64.3 59 45.8
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.2e-08 63.2 186 29.0
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-08 62.8 88 35.2
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.4e-08 62.8 186 29.0
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.7e-07 60.5 73 50.7
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.0e-06 59.3 64 50.0
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.4e-06 58.9 43 53.5
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.7e-06 56.6 64 39.1


User provided reference genes

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