Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.3e-241 838.6 457 100.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 1.5e-187 659.8 459 80.4
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 4.9e-183 644.8 455 78.5
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 7.9e-181 637.5 455 76.7
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.5e-179 632.5 497 72.4
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 4.1e-177 625.2 456 75.4
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 9.0e-177 624.0 456 74.6
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 2.2e-175 619.4 461 70.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 2.2e-175 619.4 464 74.4
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 2.2e-175 619.4 455 74.1
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.9e-174 616.3 456 69.5
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.9e-174 616.3 454 74.7
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.2e-174 615.1 455 76.0
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 9.3e-174 614.0 466 69.3
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 3.6e-173 612.1 453 76.2
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.6e-173 611.7 457 75.3
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 7.9e-173 610.9 456 74.3
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.8e-172 609.8 457 67.2
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 2.3e-172 609.4 458 67.5
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 3.0e-172 609.0 458 73.1
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.1e-171 607.1 457 67.0
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 1.6e-170 603.2 460 65.4
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.8e-170 602.4 431 72.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 8.2e-170 600.9 429 76.2
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 1.2e-168 597.0 458 73.4
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.0e-167 591.7 464 70.9
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.7e-165 585.9 480 63.3
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 1.4e-164 583.6 476 64.5
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.8e-164 583.2 489 68.1
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.0e-164 582.4 529 58.2
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 2.6e-163 579.3 462 70.1
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 2.6e-163 579.3 455 71.9
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 9.7e-163 577.4 447 66.7
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 9.7e-163 577.4 467 69.8
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 2.2e-162 576.2 484 68.4
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 3.7e-162 575.5 459 65.1
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 6.3e-162 574.7 481 65.9
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.1e-161 573.9 455 71.4
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.8e-161 573.2 397 78.1
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 2.4e-161 572.8 486 67.3
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 4.5e-160 568.5 461 70.7
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 4.5e-160 568.5 465 61.7
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 7.7e-160 567.8 483 66.9
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.7e-159 566.6 461 63.6
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 1.7e-159 566.6 461 70.5
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 5.0e-159 565.1 469 60.1
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 8.5e-159 564.3 456 69.3
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.1e-158 563.9 487 58.5
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 1.1e-158 563.9 463 62.4
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 1.9e-158 563.1 456 68.6
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 5.5e-158 561.6 454 62.8
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 7.2e-158 561.2 505 60.6
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 2.1e-157 559.7 491 66.0
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 2.7e-157 559.3 465 63.2
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 4.7e-157 558.5 487 61.2
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 7.9e-157 557.8 484 58.9
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 2.3e-156 556.2 441 64.2
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 8.8e-156 554.3 496 64.9
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 1.1e-155 553.9 460 68.0
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 1.3e-154 550.4 477 67.7
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.7e-154 550.1 488 58.0
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.7e-154 550.1 488 58.0
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.4e-153 547.0 495 57.4
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.0e-151 540.8 431 62.2
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.3e-151 540.4 455 68.6
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 2.3e-148 529.6 420 62.9
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 5.2e-148 528.5 423 63.8
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 6.7e-148 528.1 420 63.6
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.3e-146 523.9 420 63.3
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 1.7e-146 523.5 421 62.2
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 8.2e-146 521.2 486 64.4
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.8e-145 520.0 483 61.3
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 3.8e-143 512.3 494 60.9
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.6e-141 506.9 430 60.2
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 3.6e-141 505.8 470 58.5
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 6.1e-141 505.0 490 54.5
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.4e-140 503.8 421 61.5
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.2e-139 500.7 549 53.4
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 4.4e-139 498.8 446 59.6
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 4.4e-139 498.8 506 52.0
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 7.5e-139 498.0 408 62.0
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 2.2e-138 496.5 474 57.2
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 6.3e-138 495.0 408 69.1
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.8e-137 493.4 455 57.1
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 9.1e-137 491.1 385 63.1
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.9e-135 486.1 408 67.6
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 7.2e-134 481.5 329 80.9
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.6e-133 480.3 458 62.4
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.8e-132 476.9 460 60.0
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 6.8e-132 474.9 421 58.0
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 6.8e-132 474.9 439 54.9
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 2.0e-131 473.4 488 60.2
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 3.7e-130 469.2 495 51.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.7e-130 469.2 421 57.2
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 6.3e-130 468.4 455 56.7
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 3.0e-124 449.5 466 58.8
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.2e-123 447.6 397 58.4
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.3e-122 444.1 397 58.2
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 7.0e-121 438.3 408 63.7
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.6e-120 437.2 408 63.7
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.3e-119 434.1 381 59.1
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.7e-117 425.6 408 62.5
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.7e-112 409.8 458 56.3
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 5.0e-111 405.6 398 56.5
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 7.3e-110 401.7 454 51.1
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 9.9e-107 391.3 391 56.8
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 2.6e-99 366.7 283 62.5
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 3.2e-97 359.8 412 46.8
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 9.2e-97 358.2 414 52.9
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.3e-79 301.2 421 42.0
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.4e-76 291.2 250 70.0
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 8.2e-69 265.4 298 47.7
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 5.5e-65 252.7 248 54.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 7.9e-64 248.8 206 65.5
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.3e-63 247.3 471 41.0
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.3e-63 247.3 471 41.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 1.4e-60 238.0 535 32.3
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 1.1e-54 218.4 208 57.2
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 2.4e-52 210.7 206 57.3
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 2.7e-48 197.2 250 47.2
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 1.5e-46 191.4 240 45.8
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 2.4e-44 184.1 109 78.0
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 2.9e-42 177.2 178 56.7
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 6.5e-42 176.0 147 62.6
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 5.5e-41 172.9 478 27.4
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 6.1e-40 169.5 151 58.9
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 3.0e-39 167.2 205 47.8
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.7e-31 139.4 81 76.5
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 6.7e-31 139.4 74 83.8
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 2.6e-30 137.5 81 74.1
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-27 128.6 114 61.4
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.5e-27 127.1 110 58.2
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 9.4e-25 119.0 67 79.1
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.2e-24 118.6 413 24.5
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.0e-23 115.5 317 27.8
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.8e-23 114.8 471 26.1
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.1e-20 102.4 84 54.8
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 7.2e-17 92.8 391 22.8
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 8.0e-16 89.4 231 32.5
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 2.6e-14 84.3 380 23.7
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 2.6e-14 84.3 451 23.3
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 3.7e-13 80.5 39 82.1
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 3.7e-13 80.5 441 22.4
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 3.7e-13 80.5 441 22.4
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.4e-12 78.6 416 21.9
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 3.1e-12 77.4 55 65.5
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 3.1e-12 77.4 414 22.2
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 9.2e-12 75.9 440 21.8
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 2.7e-11 74.3 53 64.2
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 3.5e-11 73.9 400 22.5
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 4.5e-11 73.6 512 22.1
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.0e-10 72.4 417 21.8
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 1.3e-10 72.0 517 22.1
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 1.7e-10 71.6 98 42.9
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 6.6e-10 69.7 263 25.9
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 1.9e-09 68.2 266 25.6
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 3.3e-09 67.4 265 24.9
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 3.3e-09 67.4 47 63.8
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 7.3e-09 66.2 317 24.9
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 2.8e-08 64.3 468 20.5
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 2.8e-08 64.3 314 23.2
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 3.6e-08 63.9 316 23.7
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 8.0e-08 62.8 348 23.6
Psat7g237960 Pisum sativum HOM05D005401 ORTHO05D006582 5.8e-06 56.6 39 61.5


User provided reference genes

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