Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 0.0e+00 1647.1 853 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1078.9 783 73.2
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1075.8 808 71.9
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 789 72.9
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 1.2e-311 1073.2 803 72.1
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 3.7e-309 1064.7 788 72.3
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 1.3e-306 1056.2 783 73.2
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 8.6e-306 1053.5 782 72.4
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 3.3e-305 1051.6 781 72.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.6e-304 1049.3 781 72.3
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 2.8e-304 1048.5 777 72.3
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.1e-303 1046.6 782 72.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.4e-303 1046.2 781 71.3
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 2.6e-302 1042.0 788 70.6
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 5.8e-302 1040.8 785 70.6
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 7.5e-302 1040.4 793 70.7
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 9.9e-302 1040.0 783 71.3
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.7e-301 1039.3 746 74.0
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 2.2e-301 1038.9 785 71.3
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 2.2e-301 1038.9 783 70.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 4.9e-301 1037.7 781 70.9
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 8.3e-301 1036.9 801 70.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.2e-299 1033.1 793 70.5
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 2.3e-298 1028.9 782 71.2
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 3.0e-298 1028.5 785 70.7
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 1.8e-295 1019.2 784 69.9
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 5.2e-295 1017.7 783 69.9
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 5.2e-295 1017.7 774 70.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.8e-295 1017.3 784 69.8
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.8e-295 1017.3 784 69.8
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 1.5e-294 1016.1 710 75.1
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.0e-294 1015.8 779 69.8
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.0e-294 1015.8 757 71.3
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 2.0e-294 1015.8 789 69.5
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 4.4e-294 1014.6 789 69.1
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 5.8e-294 1014.2 774 69.6
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 9.9e-294 1013.4 786 69.1
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 9.9e-294 1013.4 787 69.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.2e-293 1012.3 781 69.4
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 2.2e-293 1012.3 779 69.7
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 2.9e-293 1011.9 780 69.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.9e-292 1009.2 793 69.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 3.2e-292 1008.4 803 68.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 3.2e-292 1008.4 788 68.7
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 2.1e-291 1005.7 789 67.9
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 2.1e-291 1005.7 795 68.1
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 2.1e-291 1005.7 792 68.9
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 7.8e-291 1003.8 752 69.8
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 3.9e-290 1001.5 762 69.8
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 6.6e-290 1000.7 714 72.7
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 1.9e-289 999.2 795 67.9
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 7.3e-289 997.3 756 70.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 8.1e-288 993.8 753 69.7
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 3.1e-287 991.9 717 72.8
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 2.6e-286 988.8 778 67.7
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 5.1e-282 974.5 710 71.4
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 5.1e-282 974.5 780 67.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.1e-281 973.4 792 68.1
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 1.5e-281 973.0 719 70.2
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.5e-281 973.0 793 67.6
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 3.3e-281 971.8 710 71.1
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 5.6e-281 971.1 726 69.6
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 1.3e-280 969.9 776 66.9
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 2.8e-280 968.8 710 71.1
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 2.8e-280 968.8 710 71.1
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 3.6e-280 968.4 759 67.7
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 2.4e-279 965.7 711 70.7
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 2.4e-279 965.7 770 67.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.4e-279 965.7 990 57.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 6.9e-279 964.1 865 62.0
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.5e-278 963.0 783 66.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.0e-278 962.6 728 69.6
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 3.4e-278 961.8 815 64.4
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 9.9e-278 960.3 710 69.3
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.9e-277 958.7 726 69.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 2.4e-276 955.7 731 68.5
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 1.2e-275 953.4 723 69.7
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 1.6e-275 953.0 784 67.0
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.1e-275 952.6 806 65.6
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 1.5e-273 946.4 782 65.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.1e-272 942.6 782 66.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 2.3e-266 922.5 779 65.0
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 9.0e-263 910.6 748 66.2
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 9.7e-257 890.6 751 62.6
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 5.0e-253 878.2 725 63.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 6.5e-245 851.3 714 62.9
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 8.5e-245 850.9 629 71.4
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 7.2e-236 821.2 653 69.5
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 6.7e-234 814.7 715 62.2
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 3.7e-232 808.9 691 61.4
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.5e-230 802.0 607 70.3
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.3e-229 800.4 653 66.3
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 8.5e-229 797.7 648 67.0
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 4.2e-228 795.4 645 67.9
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 6.7e-226 788.1 588 70.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 6.3e-224 781.6 588 70.2
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.7e-221 773.5 588 68.5
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.0e-218 764.2 726 57.0
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.8e-215 753.4 742 55.4
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 9.1e-215 751.1 648 63.3
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.8e-208 729.6 411 87.8
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.0e-197 694.5 592 65.7
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 6.2e-195 685.3 605 63.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.3e-192 677.6 701 53.5
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 6.4e-184 648.7 382 83.5
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 6.6e-181 638.6 352 87.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.8e-176 622.9 398 77.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 4.2e-159 566.2 499 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 5.6e-156 555.8 499 60.1
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.8e-115 420.6 447 55.5
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 8.0e-110 402.5 338 64.8
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 4.4e-108 396.7 270 74.4
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.7e-107 394.8 346 61.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 3.6e-102 377.1 688 35.3
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 6.6e-96 356.3 712 33.4
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.0e-93 349.0 306 61.1
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.8e-90 338.2 194 85.6
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.0e-85 322.4 722 33.7
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 5.4e-82 310.1 169 91.7
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 5.6e-79 300.1 578 35.1
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.8e-59 234.2 192 60.9
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 8.7e-56 223.0 174 70.1
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 5.6e-47 193.7 114 86.0
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.2e-46 190.3 250 46.4
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.5e-44 185.7 255 47.8
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.7e-38 164.5 173 49.7
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.4e-37 161.8 251 39.4
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.0e-37 161.0 108 72.2
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 9.0e-37 159.8 112 70.5
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.1e-34 152.9 95 77.9
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.2e-33 149.4 80 91.2
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 8.7e-32 143.3 133 59.4
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.1e-30 138.7 176 46.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 6.3e-30 137.1 86 79.1
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 8.2e-30 136.7 71 81.7
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 5.0e-27 127.5 98 65.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-23 115.9 62 93.5
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 5.7e-23 114.0 64 87.5
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.1e-21 109.8 62 85.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.8e-21 109.0 60 83.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 5.1e-16 90.9 50 76.0
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.3e-14 86.3 51 74.5
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.8e-14 84.3 56 76.8
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 7.4e-07 60.5 48 62.5


User provided reference genes

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