Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1734.5 885 100.0
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1390.6 827 84.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1370.5 887 78.9
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1369.4 886 78.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1345.9 831 81.9
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1344.7 880 79.7
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1344.3 884 78.4
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1342.8 892 76.7
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1339.3 891 76.1
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1338.2 814 82.7
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1336.6 883 76.4
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1330.1 882 77.9
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1328.2 880 77.8
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1325.1 888 76.7
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1323.1 883 77.0
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1322.8 816 82.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1318.5 886 76.3
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1315.4 883 77.2
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1314.3 834 80.0
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1312.7 917 74.7
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1312.4 889 76.3
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1312.4 885 76.4
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1312.0 884 76.8
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1311.2 888 76.0
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1311.2 879 77.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1310.0 881 76.0
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1309.7 903 74.9
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1308.1 888 75.8
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1303.9 874 77.2
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1303.1 898 74.4
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1302.7 907 74.8
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1296.6 884 75.0
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1295.8 882 75.5
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1295.8 832 78.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1293.9 896 75.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1293.5 886 75.4
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1291.6 893 74.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1288.9 899 74.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1285.0 906 74.1
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1283.5 890 74.6
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1282.3 890 74.0
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1281.5 890 74.6
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1281.2 907 73.8
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1278.5 889 73.7
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1278.1 889 74.2
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1276.5 879 76.6
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1275.4 888 73.8
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1274.2 881 74.5
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1272.7 889 74.5
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1271.1 890 73.4
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1270.8 887 73.7
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1270.0 880 74.8
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1268.8 887 73.6
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1266.5 894 74.2
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1265.0 902 72.4
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1263.8 899 73.0
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1262.3 878 74.3
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1260.7 895 72.5
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1260.4 900 72.7
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1258.4 814 77.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1255.7 878 73.3
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1254.6 881 74.5
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1250.7 828 76.6
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1250.3 889 73.1
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 882 73.7
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1243.8 848 75.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1227.6 846 75.7
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1223.0 915 70.4
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1206.0 870 71.8
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1206.0 824 73.5
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1204.9 890 70.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1204.5 872 72.4
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1198.7 871 72.3
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1192.2 889 69.6
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1191.8 824 73.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1189.1 809 73.3
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1183.7 899 69.0
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1177.2 891 70.6
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1177.2 868 71.1
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1175.2 850 72.9
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1160.2 836 70.8
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1131.3 841 69.1
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1116.7 808 71.2
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1116.7 808 71.2
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 9.9e-289 996.9 878 62.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 2.8e-275 952.2 622 78.6
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.9e-268 929.5 552 83.5
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.8e-253 879.8 820 56.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 2.0e-249 866.3 621 73.8
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 6.7e-245 851.3 565 76.8
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.0e-244 849.7 472 87.9
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 4.7e-238 828.6 858 51.7
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 6.1e-238 828.2 519 80.3
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 4.1e-226 788.9 828 51.2
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.5e-215 753.8 510 77.1
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.3e-205 719.9 482 75.1
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 9.8e-204 714.5 570 69.1
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 5.4e-194 682.2 827 46.4
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 4.6e-193 679.1 824 45.8
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.2e-180 637.9 465 72.5
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.2e-169 601.3 411 74.7
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 4.8e-150 536.2 825 38.8
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 7.9e-145 518.8 351 76.9
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 6.1e-105 386.3 272 73.5
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.7e-102 378.3 307 67.8
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.7e-102 377.1 201 90.0
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.0e-99 369.0 209 87.1
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.3e-96 357.8 304 63.8
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 9.8e-95 352.4 248 74.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.0e-92 344.7 222 78.4
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.0e-91 340.1 253 70.8
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.4e-88 332.0 198 85.4
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.4e-88 332.0 197 81.2
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.3e-88 331.3 238 73.9
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.5e-55 222.2 144 70.8
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.7e-54 218.8 128 82.8
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.7e-49 201.1 111 87.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.8e-49 200.7 176 61.9
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.4e-47 194.5 113 80.5
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 3.2e-45 188.0 119 78.2
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 6.9e-40 170.2 136 66.9
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 7.6e-39 166.8 102 83.3
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 7.2e-37 160.2 209 48.3
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 8.7e-35 153.3 87 85.1
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.2e-25 120.2 169 43.2
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.0e-22 110.9 87 63.2
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-20 106.3 82 70.7
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.0e-19 103.2 69 72.5
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.7e-17 95.9 59 84.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.8e-16 92.4 72 65.3
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-16 92.4 72 65.3
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.0e-16 90.5 65 70.8
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 60 70.0
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.5e-15 87.8 53 83.0
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 2.5e-13 82.0 50 80.0
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.1e-12 79.0 71 67.6
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 3.3e-10 71.6 127 40.9
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 2.8e-09 68.6 200 27.5
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 3.7e-09 68.2 228 26.3
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 6.3e-09 67.4 49 71.4
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 6.3e-09 67.4 242 24.8
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.1e-08 66.6 231 26.4
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 3.5e-07 61.6 42 69.0


User provided reference genes

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