Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 0.0e+00 1270.8 877 100.0
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 4.9e-264 914.8 888 73.9
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 1.9e-255 886.3 894 75.6
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 7.9e-254 880.9 887 75.5
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 1.6e-251 873.2 885 74.0
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 6.9e-250 867.8 886 71.9
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 3.4e-249 865.5 891 74.0
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.3e-245 853.6 892 71.5
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 3.3e-244 849.0 886 72.5
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 6.1e-238 828.2 883 72.6
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 2.5e-236 822.8 892 69.8
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 3.1e-234 815.8 890 69.0
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 2.6e-233 812.8 971 57.3
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 5.9e-233 811.6 891 68.4
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 6.5e-232 808.1 895 69.4
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 2.5e-231 806.2 901 68.1
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 3.2e-231 805.8 889 69.0
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 2.1e-230 803.1 920 69.0
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 2.3e-229 799.7 891 67.3
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 3.9e-229 798.9 885 68.7
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 3.9e-229 798.9 855 68.9
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 8.8e-229 797.7 886 70.5
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 8.8e-229 797.7 927 67.6
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 2.8e-227 792.7 894 66.8
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 6.3e-227 791.6 855 68.7
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 1.1e-226 790.8 878 70.0
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 4.1e-226 788.9 844 70.5
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 9.1e-226 787.7 900 67.0
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 2.6e-225 786.2 889 66.4
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 7.7e-225 784.6 883 66.5
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 1.0e-224 784.3 880 72.0
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 1.0e-224 784.3 882 71.1
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 2.5e-223 779.6 915 66.4
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 5.5e-223 778.5 891 57.5
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 1.5e-220 770.4 877 68.9
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 4.4e-220 768.8 918 64.7
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 2.2e-219 766.5 899 65.2
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 8.2e-219 764.6 876 65.6
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 8.2e-219 764.6 856 54.1
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 1.1e-218 764.2 891 66.4
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 1.8e-218 763.5 880 65.1
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 2.4e-218 763.1 882 68.6
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 3.1e-218 762.7 892 69.1
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 9.1e-218 761.1 833 67.8
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.5e-217 760.4 797 72.3
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 2.2e-216 756.5 888 68.4
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 3.8e-216 755.7 931 63.7
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 8.5e-216 754.6 880 65.7
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 8.5e-216 754.6 881 64.8
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 1.5e-215 753.8 903 65.4
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 1.5e-215 753.8 919 66.3
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 1.9e-215 753.4 882 70.5
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 1.2e-214 750.7 884 68.7
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 1.6e-214 750.4 877 64.0
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 2.7e-214 749.6 832 66.6
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 2.7e-214 749.6 891 65.4
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 8.0e-214 748.0 920 64.9
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 1.0e-213 747.7 861 66.7
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 3.0e-213 746.1 823 66.7
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 8.8e-213 744.6 1002 51.0
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 2.0e-212 743.4 874 64.4
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 9.7e-212 741.1 916 64.3
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 9.7e-212 741.1 890 64.8
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 1.3e-211 740.7 829 66.1
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 1.3e-211 740.7 829 66.1
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 4.8e-211 738.8 880 64.0
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 8.2e-211 738.0 828 66.3
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 9.1e-210 734.6 874 63.8
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 2.0e-209 733.4 877 63.6
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 5.9e-209 731.9 874 63.6
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 6.5e-208 728.4 874 63.6
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 1.1e-207 727.6 874 63.4
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 3.2e-207 726.1 902 60.2
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 4.2e-207 725.7 859 70.4
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 4.2e-207 725.7 878 63.4
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 4.2e-207 725.7 878 63.4
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 6.3e-203 711.8 845 69.2
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 7.0e-202 708.4 862 65.3
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 2.7e-201 706.4 898 64.8
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 1.3e-200 704.1 821 52.7
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 1.7e-200 703.7 820 64.9
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 5.0e-200 702.2 869 62.7
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.9e-199 700.3 880 64.9
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 1.9e-199 700.3 868 68.4
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.2e-199 699.5 860 61.7
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 6.8e-197 691.8 771 71.7
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.3e-195 687.6 860 63.1
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 1.7e-195 687.2 873 63.8
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 1.8e-194 683.7 843 64.4
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 3.5e-193 679.5 832 68.1
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 5.9e-193 678.7 872 61.0
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 5.5e-191 672.2 898 63.6
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 9.2e-186 654.8 880 63.5
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 1.6e-185 654.1 899 64.3
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 2.9e-184 649.8 893 59.0
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 4.4e-180 636.0 874 64.8
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.1e-178 631.3 604 79.5
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 4.6e-177 625.9 861 64.0
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 8.6e-176 621.7 708 70.8
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 1.5e-172 610.9 619 72.4
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 3.7e-171 606.3 615 73.5
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 4.9e-171 605.9 614 73.6
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 6.4e-163 578.9 575 76.5
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 1.3e-160 571.2 819 60.8
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 8.6e-160 568.5 668 65.0
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.5e-159 567.0 535 63.6
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 6.8e-157 558.9 532 68.0
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 4.0e-141 506.5 838 56.7
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 9.0e-141 505.4 457 66.1
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 3.4e-140 503.4 852 51.9
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 3.8e-139 500.0 809 54.1
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 6.2e-134 482.6 543 59.3
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 3.0e-120 437.2 537 47.5
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 4.2e-114 416.8 457 54.0
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 5.7e-111 406.4 434 59.7
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 1.4e-104 385.2 840 37.0
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 2.7e-81 307.8 917 37.6
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 3.0e-67 261.2 330 77.3
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 6.8e-64 250.0 225 61.3
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 1.5e-58 232.3 288 64.9
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.6e-57 228.8 333 45.0
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 6.2e-57 226.9 201 59.7
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 2.0e-55 221.9 212 79.7
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 2.7e-52 211.5 275 45.5
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.0e-51 209.5 185 57.3
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 4.0e-48 197.6 229 61.6
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 1.2e-47 196.1 377 35.5
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 3.8e-46 191.0 150 62.0
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 5.1e-43 180.6 874 34.6
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 3.6e-41 174.5 396 32.8
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 8.1e-41 173.3 117 73.5
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 4.0e-40 171.0 111 71.2
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 3.8e-38 164.5 213 57.3
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 1.0e-35 156.4 638 37.6
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 2.3e-35 155.2 918 21.5
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 2.1e-33 148.7 99 68.7
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 4.8e-33 147.5 103 68.9
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 3.4e-31 141.4 109 57.8
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 6.0e-28 130.6 85 71.8
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.9e-26 125.6 132 52.3
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 1.8e-24 119.0 92 66.3
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.3e-22 112.8 84 58.3
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 3.9e-19 101.3 55 83.6
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.9e-18 99.0 116 51.7
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 1.3e-17 96.3 60 76.7
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 1.0e-14 86.7 147 46.3
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 2.1e-12 79.0 49 71.4
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 1.3e-11 76.3 91 49.5
Cpa.g.sc43.119 Carica papaya HOM05D004758 ORTHO05D006063 3.0e-11 75.1 44 84.1
Psat0s3292g0040 Pisum sativum HOM05D000344 ORTHO05D001967 1.1e-08 66.6 49 67.3
MELO3C034796.2 Cucumis melo HOM05D009856 ORTHO05D168594 2.0e-07 62.4 60 53.3
Ciclev10026022m.g Citrus clementina HOM05D001315 ORTHO05D001618 2.9e-06 58.5 104 26.9
Gohir.A02G122100 Gossypium hirsutum HOM05D001315 ORTHO05D001618 5.0e-06 57.8 103 27.2
Aqoxy7G01801 Aquilegia oxysepala HOM05D001315 ORTHO05D001618 6.5e-06 57.4 110 26.4


User provided reference genes

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