Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 9.8e-80 300.4 195 100.0
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 5.2e-65 251.5 195 79.5
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.2e-64 250.4 195 74.9
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.5e-64 250.0 195 75.4
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.6e-64 249.2 195 82.6
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.3e-63 246.9 195 69.2
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.2e-63 246.1 195 75.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 4.9e-63 245.0 195 74.4
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 8.3e-63 244.2 193 69.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.1e-62 243.8 195 77.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-62 243.4 195 69.2
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 2.4e-62 242.7 195 72.8
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.1e-62 241.9 195 66.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.6e-61 240.0 195 65.6
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.6e-61 240.0 197 65.5
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 2.0e-61 239.6 192 69.3
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 2.7e-61 239.2 195 70.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.5e-61 238.8 195 82.1
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 5.9e-61 238.0 195 76.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 5.9e-61 238.0 195 67.2
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.0e-60 237.3 195 66.2
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.0e-60 237.3 192 69.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-60 236.9 195 66.2
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.3e-60 236.9 193 65.8
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.7e-60 236.5 195 82.6
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.3e-60 236.1 195 64.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.3e-60 236.1 195 64.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.0e-60 235.7 193 67.4
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.9e-60 235.3 195 79.0
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.9e-60 235.3 195 66.2
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 5.0e-60 235.0 193 67.4
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 5.0e-60 235.0 194 68.0
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 8.6e-60 234.2 195 80.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 8.6e-60 234.2 195 80.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 8.6e-60 234.2 195 65.1
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.9e-59 233.0 195 81.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.9e-59 233.0 197 65.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.5e-59 232.6 193 68.9
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.5e-59 232.6 197 65.0
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.5e-59 232.6 195 81.5
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.5e-59 232.6 193 70.5
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 2.5e-59 232.6 193 67.4
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 4.3e-59 231.9 192 63.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.3e-59 231.1 193 69.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 9.5e-59 230.7 195 79.0
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 9.5e-59 230.7 192 69.3
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.6e-58 229.9 195 79.0
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.6e-58 229.9 192 62.5
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.1e-58 229.6 195 79.0
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.1e-58 229.6 195 77.4
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.8e-58 229.2 195 80.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 4.7e-58 228.4 195 62.1
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 62.1
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 77.9
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 78.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 65.6
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 73.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.2e-58 228.0 195 73.3
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 8.0e-58 227.6 195 63.6
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 8.0e-58 227.6 195 65.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 8.0e-58 227.6 192 61.5
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-57 227.3 195 76.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.1e-57 227.3 195 75.9
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-57 227.3 192 65.1
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-57 226.9 195 65.1
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-57 226.9 195 75.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-57 226.9 195 75.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.4e-57 226.9 195 75.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-57 226.5 195 69.2
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.3e-57 226.1 195 63.6
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.3e-57 226.1 195 62.6
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.3e-57 226.1 195 64.1
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.0e-57 225.3 195 75.9
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.0e-57 225.3 195 75.9
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.2e-57 224.9 195 76.4
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 5.2e-57 224.9 195 63.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 6.8e-57 224.6 195 61.5
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.8e-57 224.6 195 62.1
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 6.8e-57 224.6 194 66.0
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 8.9e-57 224.2 192 79.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 8.9e-57 224.2 195 65.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.2e-56 223.8 194 66.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.2e-56 223.8 195 76.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.5e-56 223.4 195 63.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.5e-56 223.4 235 57.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.5e-56 223.4 207 60.9
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.0e-56 223.0 195 65.1
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.0e-56 223.0 195 77.9
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.0e-56 223.0 192 60.9
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 2.6e-56 222.6 195 62.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.4e-56 222.2 195 67.2
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 5.8e-56 221.5 195 73.8
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.8e-56 221.5 193 69.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 7.5e-56 221.1 195 65.6
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 9.8e-56 220.7 192 65.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.3e-55 220.3 192 62.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.3e-55 220.3 193 74.1
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.7e-55 219.9 192 73.4
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.2e-55 219.5 192 65.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 2.2e-55 219.5 199 60.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.2e-55 219.5 193 68.9
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 2.2e-55 219.5 193 60.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.9e-55 219.2 193 59.6
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 3.7e-55 218.8 191 62.3
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.7e-55 218.8 193 73.1
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 3.7e-55 218.8 192 60.9
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.9e-55 218.4 195 73.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 4.9e-55 218.4 192 60.9
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.9e-55 218.4 193 68.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 6.4e-55 218.0 195 68.2
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.4e-55 218.0 195 62.1
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 6.4e-55 218.0 132 84.8
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.4e-55 218.0 192 68.2
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 8.3e-55 217.6 192 60.9
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.1e-54 217.2 195 74.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.4e-54 216.9 192 67.7
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.9e-54 216.5 195 68.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.2e-54 215.7 195 62.6
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 5.4e-54 214.9 192 76.0
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.4e-54 214.9 195 76.4
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.4e-54 214.9 195 65.6
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 7.0e-54 214.5 193 61.7
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 7.0e-54 214.5 195 76.9
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 7.0e-54 214.5 195 63.1
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 9.2e-54 214.2 208 61.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.0e-53 213.0 195 74.4
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.0e-53 213.0 192 66.7
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.7e-53 212.6 195 73.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 6.0e-53 211.5 195 73.3
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 6.0e-53 211.5 195 75.4
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-52 210.7 195 71.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.3e-52 209.5 195 69.2
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-52 209.5 195 71.8
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 5.0e-52 208.4 196 59.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 8.6e-52 207.6 193 70.5
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.1e-51 207.2 195 72.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.5e-51 206.8 195 72.3
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-51 205.3 195 71.8
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 5.6e-51 204.9 196 55.6
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.2e-50 203.8 193 68.9
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.6e-50 202.2 218 67.4
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 9.9e-48 194.1 208 54.8
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.4e-47 191.4 129 76.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.2e-45 187.2 125 76.8
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.2e-45 187.2 192 67.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.3e-44 183.0 117 77.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-43 178.7 132 70.5
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.8e-41 173.3 197 49.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-39 167.2 106 79.2
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.7e-37 159.5 233 45.9
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 2.7e-37 159.5 196 49.5
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.9e-35 153.3 137 69.3
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.6e-34 149.1 147 53.1
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.4e-32 142.5 129 69.0
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.9e-31 139.4 195 40.5
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.4e-31 138.3 129 65.9
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 3.1e-25 119.4 145 51.7
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 7.6e-16 88.2 65 66.2
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-10 70.5 50 70.0
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 3.1e-09 66.2 48 66.7
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.5e-08 63.9 51 62.7
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.0e-08 63.5 50 60.0
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.6e-08 61.6 50 62.0
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.9e-07 58.9 50 60.0
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 8.4e-07 58.2 117 30.8
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 7.1e-06 55.1 47 59.6
Thecc.02G021900 Theobroma cacao HOM05D003925 ORTHO05D409199 7.1e-06 55.1 110 38.2


User provided reference genes

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