Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 0.0e+00 1173.7 571 100.0
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.4e-304 1048.9 570 88.1
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 3.5e-303 1044.3 566 88.2
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.0e-302 1041.2 571 87.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 5.6e-301 1036.9 561 87.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 9.5e-301 1036.2 571 86.9
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 3.6e-300 1034.2 562 88.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 5.2e-299 1030.4 561 87.0
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 8.9e-299 1029.6 564 86.9
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.2e-298 1029.2 564 86.9
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 9.9e-298 1026.2 564 86.7
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.7e-297 1024.2 571 86.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.2e-295 1019.2 554 87.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 6.0e-295 1016.9 564 86.5
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.3e-294 1015.8 563 86.7
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.0e-294 1014.6 560 87.3
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 5.1e-294 1013.8 563 85.3
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.1e-293 1012.7 558 85.5
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 5.6e-293 1010.4 555 85.9
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.8e-290 1000.3 565 85.3
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 9.9e-290 999.6 554 85.7
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 4.2e-288 994.2 554 85.6
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 4.2e-288 994.2 534 88.2
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.4e-288 993.8 565 84.8
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 3.5e-287 991.1 560 84.8
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 5.1e-286 987.3 555 84.3
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 8.7e-286 986.5 560 84.8
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.5e-285 984.9 558 83.0
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.3e-285 984.2 560 84.1
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.1e-284 981.9 558 84.4
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.1e-284 981.9 571 83.0
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.6e-284 981.1 524 88.9
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 6.2e-284 980.3 558 83.0
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 6.9e-283 976.9 554 82.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.0e-282 975.3 564 81.7
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 5.8e-282 973.8 564 81.9
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 3.8e-281 971.1 583 80.3
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 3.8e-281 971.1 559 82.6
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.2e-280 968.0 554 83.9
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 4.6e-279 964.1 557 82.0
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 6.0e-279 963.8 558 80.8
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 6.0e-279 963.8 557 82.2
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.0e-278 963.0 558 82.1
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.9e-277 958.7 551 81.1
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.5e-277 958.4 550 82.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 4.3e-277 957.6 555 82.7
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 5.6e-277 957.2 555 80.9
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 9.6e-277 956.4 558 81.5
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 9.6e-277 956.4 554 80.0
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.6e-276 955.7 558 81.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 4.8e-276 954.1 554 81.8
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.1e-275 953.0 561 79.5
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-275 952.6 580 77.6
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 6.9e-275 950.3 555 82.5
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.2e-274 949.5 536 85.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 5.8e-274 947.2 596 75.5
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.9e-273 944.9 558 80.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.9e-273 944.9 554 80.3
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.9e-273 944.9 558 79.9
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.4e-272 942.6 567 81.7
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 7.1e-272 940.3 557 79.7
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 9.3e-272 939.9 563 78.7
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 3.5e-271 937.9 560 81.1
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.0e-270 936.4 549 81.1
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.3e-270 936.0 600 76.8
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 1.3e-270 936.0 550 80.4
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.9e-270 934.5 543 81.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.1e-269 932.9 553 80.5
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 5.6e-269 930.6 559 77.6
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 9.6e-269 929.9 533 83.1
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.7e-268 927.9 554 77.8
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 3.7e-268 927.9 552 78.3
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.8e-268 927.5 550 78.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.4e-267 926.0 552 78.3
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.8e-267 925.6 559 77.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.0e-267 923.3 555 76.9
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 3.4e-266 921.4 517 83.8
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 4.5e-266 921.0 554 77.8
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.8e-265 917.9 558 77.8
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.8e-265 917.9 554 77.3
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 4.9e-265 917.5 554 76.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.1e-264 916.4 547 77.9
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.2e-264 914.8 561 76.6
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 5.5e-264 914.1 551 77.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.1e-264 913.7 561 75.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.2e-263 912.9 551 78.2
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.1e-263 912.1 555 78.9
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 2.1e-263 912.1 549 79.6
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.7e-263 911.8 535 79.8
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.3e-262 908.7 538 82.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.0e-262 908.3 550 75.1
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.9e-261 905.6 550 77.1
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.1e-260 902.1 558 77.6
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.1e-259 899.8 554 75.3
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.1e-259 899.8 571 75.1
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 3.4e-258 894.8 560 75.7
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-257 893.3 560 75.4
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.0e-257 893.3 560 75.5
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.0e-257 893.3 560 75.4
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.9e-257 891.0 532 80.5
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 6.5e-257 890.6 555 75.9
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 6.5e-257 890.6 555 75.9
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.5e-257 890.6 521 83.7
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 6.5e-257 890.6 560 77.5
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.1e-256 889.8 555 75.7
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 5.5e-256 887.5 560 74.5
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 5.5e-256 887.5 555 75.7
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-255 885.9 555 75.7
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.6e-255 885.9 549 75.8
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.1e-255 885.6 555 75.3
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.3e-253 878.2 560 75.0
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 5.5e-248 860.9 518 77.6
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 4.6e-247 857.8 544 75.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 7.4e-245 850.5 542 76.2
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 7.7e-242 840.5 495 81.4
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.7e-241 839.3 555 73.0
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 2.5e-240 835.5 517 77.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 5.7e-237 824.3 555 73.0
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-236 823.2 515 76.9
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.7e-236 822.8 536 76.5
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-229 800.0 565 68.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-228 796.2 553 70.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.2e-226 790.0 555 68.6
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.6e-218 763.1 478 76.8
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.4e-203 711.4 580 62.2
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.7e-202 709.1 559 64.2
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.3e-201 706.8 583 60.9
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.6e-199 699.9 416 81.0
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-195 687.2 580 60.7
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.2e-163 579.3 346 82.4
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.6e-146 522.3 319 78.4
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.2e-141 507.7 278 84.9
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-141 507.3 362 69.3
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 3.3e-136 489.6 263 92.0
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.6e-125 453.4 323 68.7
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.2e-124 450.3 531 50.1
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.5e-115 420.2 294 70.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 6.8e-105 385.6 217 78.3
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.1e-102 376.3 217 83.4
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.6e-101 374.4 291 61.2
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 5.7e-96 355.9 288 61.8
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.9e-89 332.0 251 68.9
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.1e-78 298.5 575 32.5
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 9.2e-78 295.4 198 72.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.2e-74 285.0 201 70.1
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 8.9e-65 252.3 145 78.6
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.6e-61 241.5 458 31.4
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.0e-56 224.6 129 79.1
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.1e-53 214.5 228 47.4
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.9e-37 159.5 123 58.5
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.6e-35 153.3 128 56.2
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 4.0e-33 147.1 102 64.7
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 6.9e-33 146.4 100 70.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 7.6e-32 142.9 152 50.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.4e-30 138.7 106 61.3
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.0e-23 115.9 131 48.1
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.9e-22 111.7 54 87.0
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.7e-18 97.4 56 80.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 5.5e-14 83.6 68 57.4
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.4e-11 73.9 43 79.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.9e-06 58.5 70 34.3
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.9e-06 58.5 65 36.9
Sc04g0001090 Simmondsia chinensis HOM05D000082 ORTHO05D000038 3.2e-06 57.8 61 41.0
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 5.5e-06 57.0 54 37.0
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 5.5e-06 57.0 97 34.0
Sopen03g041460 Solanum pennellii HOM05D000086 ORTHO05D008998 5.5e-06 57.0 71 36.6
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 5.5e-06 57.0 102 34.3
HPP92_020305 Vanilla planifolia HOM05D000459 ORTHO05D000798 5.5e-06 57.0 76 31.6
CDE10G0628 Ceratophyllum demersum HOM05D000082 ORTHO05D008126 9.4e-06 56.2 85 34.1
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 9.4e-06 56.2 62 38.7
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.4e-06 56.2 51 41.2


User provided reference genes

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