Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 4164.0 2231 100.0
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2887.1 2236 71.8
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2839.7 2232 70.6
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2798.5 2229 70.2
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2758.8 2233 68.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2757.2 2234 67.9
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2748.4 2234 68.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2724.5 2232 66.9
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2721.0 2236 67.2
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2712.2 2238 66.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2699.8 2329 66.0
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2683.7 2234 65.8
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2676.0 2232 65.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2662.1 2232 65.5
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2652.9 2232 66.3
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2647.1 2259 64.8
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2618.2 2285 63.6
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2612.8 2236 64.9
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2610.1 2294 63.5
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2592.0 2228 64.6
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2589.7 2237 63.6
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2583.1 2277 64.3
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2582.4 2307 62.5
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2576.6 2240 65.1
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2554.6 2232 63.7
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2549.6 2243 63.8
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2506.5 2232 62.6
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2498.8 2301 61.9
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2484.1 2250 62.5
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2479.5 2237 62.4
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2477.2 2238 62.2
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2466.8 2254 61.4
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2450.6 2235 62.8
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2448.7 2235 61.4
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2443.7 2238 61.5
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2437.5 2233 62.1
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2404.0 2230 61.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2375.9 2239 60.3
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2375.5 1718 73.4
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2368.2 2277 59.8
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2367.0 2277 59.9
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2364.0 2277 59.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2362.8 2333 59.0
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2346.2 2243 59.9
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2333.1 2239 59.9
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2315.0 2303 58.9
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2307.3 2212 59.3
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2302.7 2236 59.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2300.0 2235 59.1
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2290.0 2046 61.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2285.4 2238 58.1
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2279.6 2252 58.4
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2277.3 2046 61.9
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2269.6 2251 58.9
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2268.8 2238 58.8
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2259.2 2229 58.6
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2253.4 2238 58.8
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2234.5 2148 59.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2228.4 2241 57.7
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2209.5 2206 58.4
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 2194.5 2209 57.7
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2189.8 2244 57.0
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2178.3 2261 56.6
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2156.7 1930 62.0
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 2128.6 2166 57.6
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2124.0 2246 55.0
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 2110.5 2134 58.0
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2098.9 2239 54.8
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2093.2 2238 54.8
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2084.3 2234 54.2
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 2043.1 2239 53.7
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 2037.7 2214 55.6
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 2036.5 2188 56.7
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 2031.1 2237 53.4
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 2031.1 2238 52.9
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 2027.7 2234 54.5
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 2019.2 2244 52.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 2006.5 2229 52.5
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 2004.9 2229 52.7
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 2004.9 2238 53.4
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1987.6 2238 52.6
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1975.7 2250 52.0
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1972.2 2245 51.7
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1968.4 2218 54.7
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1917.5 1391 70.9
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1914.8 1391 70.9
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1883.6 1391 70.2
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1854.7 1423 69.4
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1849.3 2351 49.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1654.0 2197 48.3
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1566.6 2308 46.2
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1557.7 1482 60.9
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1509.6 1249 64.1
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1445.3 1631 54.0
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1351.3 2257 41.1
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1321.6 1376 56.5
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1260.7 1398 56.3
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1245.3 1247 57.3
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 0.0e+00 1240.7 1274 57.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1105.9 818 72.1
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.3e-286 990.3 1314 47.6
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 5.8e-277 959.1 1113 48.7
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 9.0e-246 855.5 840 64.9
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.5e-224 785.0 845 62.2
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 7.4e-224 782.7 845 62.2
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 1.0e-209 735.7 953 53.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.5e-208 729.6 2477 29.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.8e-201 708.4 973 45.9
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.5e-181 641.0 486 67.3
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 2.0e-168 598.6 1080 41.4
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.3e-155 554.7 1201 35.8
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.9e-143 515.0 1654 27.9
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 7.4e-139 500.4 1389 29.1
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.2e-136 493.0 426 59.4
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 9.0e-129 466.8 342 72.5
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 7.1e-126 457.2 647 46.1
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 2.1e-117 429.1 905 37.0
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 2.0e-107 396.0 465 61.3
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 5.3e-97 361.3 280 63.9
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 9.1e-97 360.5 295 66.4
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 5.2e-92 344.7 464 55.8
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 5.7e-91 341.3 1890 23.2
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.0e-88 332.8 215 76.7
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.7e-80 305.8 389 46.0
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 5.2e-76 291.6 332 50.3
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 4.1e-73 282.0 476 45.6
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.7e-71 276.6 163 84.0
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-68 266.9 332 47.3
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.1e-61 243.0 153 77.8
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.5e-54 220.3 725 35.9
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 3.3e-54 219.2 246 53.7
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 6.2e-53 214.9 252 58.7
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 3.4e-51 209.1 332 41.3
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-47 197.2 543 32.2
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 2.3e-47 196.4 153 62.7
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.1e-44 187.6 208 49.5
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-43 183.0 179 58.7
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.9e-41 176.8 112 79.5
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.0e-39 171.0 343 35.6
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 3.3e-38 166.0 128 64.8
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-35 157.5 222 41.4
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.0e-28 132.5 107 73.8
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-27 131.0 437 36.2
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-27 131.0 138 58.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-24 118.2 68 79.4
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.5e-19 104.0 354 37.6
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-18 100.9 78 61.5
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.9e-18 99.0 133 51.9
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.5e-17 95.5 68 79.4
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 5.5e-17 95.5 209 34.4
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 5.1e-15 89.0 128 46.9
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 1.9e-14 87.0 71 69.0
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.1e-12 81.3 133 33.8
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 3.8e-10 72.8 118 41.5
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 3.8e-10 72.8 110 43.6
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.4e-10 71.6 65 55.4
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-08 67.8 79 49.4
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 4.6e-08 65.9 59 67.8
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 5.1e-07 62.4 96 37.5
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 1.9e-06 60.5 52 65.4
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 2.5e-06 60.1 59 47.5
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 9.7e-06 58.2 45 64.4


User provided reference genes

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