Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.2e-178 630.6 569 100.0
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 6.1e-98 362.5 582 50.7
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 5.2e-97 359.4 578 47.2
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 5.3e-94 349.4 572 48.1
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 2.9e-92 343.6 579 45.3
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.0e-89 335.1 570 46.0
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.5e-88 331.3 580 44.8
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 9.8e-88 328.6 595 43.9
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 1.3e-87 328.2 576 47.6
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 3.1e-86 323.6 583 45.3
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.1e-86 323.6 574 54.5
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 4.1e-86 323.2 576 67.0
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 7.0e-86 322.4 592 42.9
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 5.9e-85 319.3 586 45.7
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.7e-84 317.8 573 47.5
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.8e-84 316.6 586 50.5
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 3.8e-84 316.6 579 45.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.5e-83 314.7 577 44.0
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 2.5e-83 313.9 574 44.4
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 2.1e-82 310.8 586 44.7
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 3.6e-82 310.1 581 46.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-81 307.8 573 48.7
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-81 307.8 573 48.7
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.8e-81 307.8 584 45.7
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.3e-81 307.4 575 52.9
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.6e-80 303.9 594 65.3
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.4e-80 303.5 573 46.4
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 5.7e-80 302.8 577 46.4
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 5.7e-80 302.8 586 45.2
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 7.5e-80 302.4 548 43.2
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 9.8e-80 302.0 587 44.1
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 9.8e-80 302.0 584 46.1
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 9.8e-80 302.0 586 45.9
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 8.3e-79 298.9 578 58.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.4e-78 297.4 571 58.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.6e-77 294.7 587 44.8
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 3.5e-77 293.5 586 46.9
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.0e-76 292.0 570 47.2
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.3e-76 290.8 576 45.5
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 2.9e-76 290.4 577 52.0
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 3.8e-76 290.0 573 48.5
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.1e-75 288.5 572 47.4
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-75 288.5 623 57.1
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 4.3e-75 286.6 581 44.4
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.2e-74 285.0 576 42.5
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.2e-74 285.0 584 65.4
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.2e-74 285.0 585 45.8
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 2.1e-74 284.3 604 42.9
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.8e-74 283.9 603 57.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.8e-73 281.2 578 45.3
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.8e-73 281.2 578 45.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 4.0e-73 280.0 579 44.7
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 8.9e-73 278.9 571 40.6
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 2.6e-72 277.3 589 44.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 3.4e-72 276.9 570 45.3
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 7.5e-72 275.8 581 41.8
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 6.4e-71 272.7 631 48.7
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 8.3e-71 272.3 635 57.2
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.1e-70 271.9 572 38.3
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.4e-70 271.6 635 57.2
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.2e-69 268.5 574 44.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.6e-69 268.1 576 47.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.7e-69 267.3 572 40.6
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 3.5e-69 266.9 579 41.1
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 4.6e-69 266.5 578 47.9
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 4.6e-69 266.5 578 47.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 4.6e-69 266.5 578 48.1
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 7.8e-69 265.8 624 55.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.0e-68 265.4 578 46.9
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.3e-68 265.0 574 45.5
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-68 264.6 577 46.4
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 3.0e-68 263.8 577 43.2
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.9e-68 263.5 585 57.6
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.9e-68 263.5 585 49.9
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.1e-67 261.9 577 45.9
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.5e-67 261.5 588 40.1
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.9e-67 261.2 578 54.2
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 1.9e-67 261.2 577 43.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.5e-67 260.8 581 49.9
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.5e-67 260.8 581 44.2
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 4.3e-67 260.0 585 52.8
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 5.6e-67 259.6 576 54.7
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 5.6e-67 259.6 625 64.8
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.2e-66 258.5 572 53.1
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 6.2e-66 256.1 582 47.8
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 8.0e-66 255.8 573 59.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.1e-65 253.8 598 47.2
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.5e-64 251.5 577 47.5
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 4.4e-64 250.0 166 77.7
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 4.4e-64 250.0 166 79.5
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 8.3e-63 245.7 564 55.0
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.9e-62 244.6 581 48.7
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 4.1e-62 243.4 639 49.5
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 7.0e-62 242.7 584 59.8
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.7e-60 238.0 575 41.0
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 6.6e-60 236.1 577 41.2
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-57 228.8 575 41.6
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.0e-56 224.6 247 58.3
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.4e-56 223.8 608 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.4e-54 218.4 172 70.3
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 6.0e-53 213.0 166 71.1
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.3e-51 207.2 581 47.7
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-43 181.8 177 65.0
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 7.3e-43 179.5 570 35.6
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-38 165.6 575 39.0
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.4e-38 163.3 94 89.4
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.6e-37 161.8 172 55.2
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.1e-37 161.4 467 50.1
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.1e-37 161.4 177 54.8
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.9e-36 157.1 108 82.4
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 5.1e-36 156.8 95 83.2
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 8.7e-36 156.0 162 59.3
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 4.3e-35 153.7 571 51.3
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 6.2e-34 149.8 107 75.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 5.3e-33 146.7 82 92.7
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.5e-32 145.2 145 56.6
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 5.6e-27 126.7 107 70.1
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.1e-26 124.8 116 60.3
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.3e-25 120.2 106 61.3
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.9e-22 111.7 174 38.5
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 1.6e-21 108.6 157 49.7
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.7e-20 102.8 542 23.8
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.3e-19 100.9 62 80.6
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.3e-18 99.0 154 45.5
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-18 99.0 63 81.0
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-17 95.5 135 45.2
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.0e-15 89.4 53 83.0
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.7e-15 88.6 475 30.1
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.4e-15 86.3 69 71.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.5e-14 84.7 95 48.4
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 4.2e-14 84.0 179 33.0
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 1.0e-12 79.3 152 34.9
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.7e-12 76.3 101 44.6
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 5.7e-11 73.6 68 61.8
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.7e-11 73.6 95 42.1
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 4.1e-09 67.4 47 78.7
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 4.1e-09 67.4 47 78.7
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 3.4e-08 64.3 172 26.7
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 7.7e-08 63.2 58 62.1
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.2e-06 57.8 62 62.9


User provided reference genes

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