Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 0.0e+00 1969.9 976 100.0
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.6e-217 758.4 1190 40.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.6e-215 753.8 1189 40.8
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.7e-209 733.8 1115 42.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.1e-207 726.9 1111 41.9
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.0e-202 710.3 1116 41.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.7e-201 707.2 1111 41.5
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.1e-198 698.0 1125 41.1
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.5e-194 682.9 1038 42.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.7e-188 664.1 1118 39.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-188 662.9 1119 40.2
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.8e-186 655.2 1118 38.8
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-184 651.4 1121 39.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.3e-184 649.8 1131 37.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.3e-180 637.9 1099 39.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.4e-179 633.6 1084 40.2
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.4e-179 633.6 1116 38.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 8.7e-177 625.2 1124 39.7
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.6e-173 613.6 1066 40.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 3.2e-171 606.7 1078 38.8
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 9.3e-171 605.1 1105 37.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.6e-170 604.4 1094 38.3
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 6.6e-169 599.0 1016 38.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.2e-167 592.4 1097 37.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.2e-165 588.2 1087 36.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.8e-165 585.9 1155 35.5
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-163 580.1 1139 37.1
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 3.3e-160 570.1 1102 36.5
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.4e-160 568.9 1120 36.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 9.0e-158 562.0 1129 35.7
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.2e-157 561.6 1199 35.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.6e-157 558.9 1113 35.4
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.1e-150 537.0 1202 34.0
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.3e-150 536.2 1157 34.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 8.4e-148 528.9 1092 34.5
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.3e-145 520.8 1072 35.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.1e-144 518.5 1011 37.2
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.7e-143 513.5 1093 34.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.5e-141 508.1 1094 33.8
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.0e-141 507.7 1047 35.8
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.7e-140 504.6 1066 35.3
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-139 500.7 931 39.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.6e-138 496.5 1013 36.3
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 7.9e-138 495.7 1130 32.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.8e-137 494.6 1188 32.3
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-136 490.7 1021 35.4
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.5e-133 479.9 1071 34.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 7.2e-131 472.6 1078 33.9
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.4e-129 468.4 1109 33.1
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-128 465.3 700 42.7
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.0e-128 464.5 1103 32.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.2e-123 447.2 1061 33.6
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 7.2e-123 446.0 1058 33.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.3e-121 441.0 1125 31.5
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 3.0e-121 440.7 1126 31.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-120 438.3 904 37.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.4e-120 436.8 1037 32.6
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.3e-119 433.0 1196 31.4
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.8e-118 431.4 1113 31.9
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.0e-116 425.6 1124 32.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.7e-114 416.8 885 34.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.8e-113 414.8 1076 32.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 6.3e-111 406.4 1124 31.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.4e-110 404.4 1074 31.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.1e-110 404.1 1005 32.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 7.0e-110 402.9 1096 30.8
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.2e-108 397.9 1072 31.8
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.1e-106 391.3 1063 31.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.6e-106 390.6 1030 31.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 6.1e-106 389.8 1062 31.5
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.7e-103 381.7 1074 30.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.7e-103 381.7 1118 30.9
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.9e-100 370.9 1071 31.2
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 3.3e-99 367.5 1077 30.2
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 7.0e-94 349.7 1026 31.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.3e-92 344.7 1019 29.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.8e-90 337.8 985 31.2
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.9e-86 325.1 560 40.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.9e-86 325.1 680 36.6
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.2e-86 324.3 1021 30.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.7e-85 321.2 1115 28.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.6e-83 313.5 699 34.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 6.2e-82 310.1 864 32.3
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.3e-81 308.1 897 31.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 4.0e-81 307.4 564 36.3
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.3e-76 291.6 675 33.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.2e-74 285.8 424 41.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.3e-73 281.6 609 35.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-72 278.1 607 35.6
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.6e-72 278.1 607 35.6
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.6e-72 278.1 607 35.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.3e-71 275.8 690 33.8
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.4e-71 273.1 541 35.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.7e-69 268.1 808 31.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.9e-68 264.2 989 28.0
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.1e-67 262.7 681 32.0
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.1e-65 256.1 938 28.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.8e-64 250.4 791 31.1
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 3.8e-63 247.7 150 75.3
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 4.9e-63 247.3 767 30.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 6.4e-63 246.9 632 33.4
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.2e-62 244.6 927 28.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.3e-59 234.2 800 30.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.1e-57 228.0 257 51.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.0e-57 227.6 427 37.0
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-56 225.7 913 29.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.4e-56 224.2 604 31.8
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.9e-55 221.5 767 29.6
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.4e-54 218.4 449 37.4
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.5e-51 209.1 786 28.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.3e-51 207.6 1181 24.4
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.2e-50 203.8 629 27.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-45 188.3 497 34.8
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.3e-44 186.0 459 30.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-40 172.6 142 59.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.0e-40 172.2 135 62.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.4e-40 171.4 750 26.7
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.0e-39 169.9 743 26.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-39 168.3 166 52.4
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 2.5e-38 165.2 703 28.0
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 7.1e-38 163.7 177 48.6
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.6e-37 162.5 208 44.7
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 7.9e-37 160.2 114 64.0
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.8e-34 151.8 522 26.6
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.1e-33 149.8 239 36.8
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 4.1e-33 147.9 396 32.1
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-32 146.0 709 27.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.6e-32 145.2 443 28.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.8e-31 141.4 113 59.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.1e-30 139.8 134 53.7
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 6.1e-29 134.0 960 22.7
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 5.1e-28 131.0 129 50.4
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.4e-25 122.9 152 47.4
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.0e-23 116.7 209 38.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 7.4e-19 100.5 115 42.6
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.3e-18 99.8 106 44.3
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.7e-18 98.2 338 29.3
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.1e-17 96.7 144 37.5
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.4e-17 95.5 339 29.2
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-16 92.8 65 63.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 4.5e-16 91.3 80 53.8
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.8e-15 88.2 128 37.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 5.1e-12 77.8 271 29.9
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.5e-08 65.1 74 36.5


User provided reference genes

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