Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018016001 Vitis vinifera HOM05D002650 ORTHO05D002924 2.0e-40 168.7 86 100.0
GSVIVG01018014001 Vitis vinifera HOM05D002650 ORTHO05D002924 1.1e-19 99.8 61 86.9
arahy.Tifrunner.gnm1.ann1.K69D77 Arachis hypogaea HOM05D002650 ORTHO05D002924 1.2e-13 79.7 54 72.2
arahy.Tifrunner.gnm1.ann1.4M845G Arachis hypogaea HOM05D002650 ORTHO05D002924 7.7e-13 77.0 54 68.5
Psat2g190360 Pisum sativum HOM05D002650 ORTHO05D002924 3.8e-12 74.7 53 67.9
Ca_24415_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 5.0e-12 74.3 52 69.2
Glyma.11G007500 Glycine max HOM05D002650 ORTHO05D002924 6.6e-12 73.9 53 67.9
MD13G1197200 Malus domestica HOM05D002650 ORTHO05D002924 8.6e-12 73.6 55 63.6
Cpa.g.sc58.68 Carica papaya HOM05D002650 ORTHO05D002924 1.1e-11 73.2 53 64.2
Nn1g02387 Nelumbo nucifera HOM05D002650 ORTHO05D002924 1.1e-11 73.2 55 65.5
Medtr5g006660 Medicago truncatula HOM05D002650 ORTHO05D002924 1.9e-11 72.4 53 66.0
CiPaw.01G197800 Carya illinoinensis HOM05D002650 ORTHO05D002924 2.5e-11 72.0 53 66.0
QL06p001588 Quercus lobata HOM05D002650 ORTHO05D002924 2.5e-11 72.0 53 66.0
Phvul.002G043200 Phaseolus vulgaris HOM05D002650 ORTHO05D002924 4.2e-11 71.2 54 68.5
TPR.G37883 Trifolium pratense HOM05D002650 ORTHO05D002924 5.5e-11 70.9 53 62.3
LjContig00408g0012632 Lotus japonicus HOM05D002650 ORTHO05D002924 7.2e-11 70.5 54 59.3
Manes.03G175500 Manihot esculenta HOM05D002650 ORTHO05D002924 7.2e-11 70.5 53 64.2
Potri.010G084100 Populus trichocarpa HOM05D002650 ORTHO05D002924 7.2e-11 70.5 54 64.8
Rhsim02G0027100 Rhododendron simsii HOM05D002650 ORTHO05D002924 7.2e-11 70.5 51 64.7
CANSAT78G1249 Cannabis sativa HOM05D002650 ORTHO05D002924 9.5e-11 70.1 55 61.8
Sabra10G0058900 Salix brachista HOM05D002650 ORTHO05D002924 9.5e-11 70.1 54 64.8
TAR362G0085 Trochodendron aralioides HOM05D002650 ORTHO05D002924 9.5e-11 70.1 53 64.2
Glyma.01G235700 Glycine max HOM05D002650 ORTHO05D002924 1.2e-10 69.7 53 64.2
Duzib052G0834 Durio zibethinus HOM05D002650 ORTHO05D002924 3.6e-10 68.2 56 55.4
Actinidia08479 Actinidia chinensis HOM05D002650 ORTHO05D002924 4.7e-10 67.8 54 59.3
Atru.chr4.2421 Acer truncatum HOM05D002650 ORTHO05D002924 6.1e-10 67.4 53 64.2
CSS0049240 Camellia sinensis var. sinensis HOM05D002650 ORTHO05D002924 6.1e-10 67.4 53 60.4
Cfa008466 Carpinus fangiana HOM05D002650 ORTHO05D002924 6.1e-10 67.4 45 68.9
Lj3A731G60 Lonicera japonica HOM05D002650 ORTHO05D002924 6.1e-10 67.4 53 67.9
Lalb_Chr09g0319991 Lupinus albus HOM05D002650 ORTHO05D002924 8.0e-10 67.0 45 64.4
Oeu010308.1 Olea europaea HOM05D002650 ORTHO05D002924 1.0e-09 66.6 53 62.3
VMungo1215G1359 Vigna mungo HOM05D002650 ORTHO05D002924 1.0e-09 66.6 54 64.8
Prupe.1G018300 Prunus persica HOM05D002650 ORTHO05D002924 1.8e-09 65.9 51 60.8
Haze_11208 Corylus avellana HOM05D002650 ORTHO05D002924 2.3e-09 65.5 52 63.5
PGR129G0015 Punica granatum HOM05D002650 ORTHO05D002924 3.0e-09 65.1 52 59.6
PGR142G2346 Punica granatum HOM05D002650 ORTHO05D002924 3.0e-09 65.1 52 59.6
Hund12093 Selenicereus undatus HOM05D002650 ORTHO05D002924 3.0e-09 65.1 54 55.6
ClCG05G005000 Citrullus lanatus HOM05D002650 ORTHO05D002924 5.2e-09 64.3 52 61.5
Cc03_g04080 Coffea canephora HOM05D002650 ORTHO05D002924 5.2e-09 64.3 53 58.5
vmacro15359 Vaccinium macrocarpon HOM05D002650 ORTHO05D002924 5.2e-09 64.3 51 62.7
AUR62042447 Chenopodium quinoa HOM05D002650 ORTHO05D002924 8.9e-09 63.5 55 58.2
Sopen09g031260 Solanum pennellii HOM05D002650 ORTHO05D002924 8.9e-09 63.5 53 56.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 8.9e-09 63.5 48 64.6
Ciclev10004646m.g Citrus clementina HOM05D002650 ORTHO05D002924 1.5e-08 62.8 45 64.4
Nitab4.5_0000085g0370 Nicotiana tabacum HOM05D002650 ORTHO05D002924 1.5e-08 62.8 55 54.5
Nitab4.5_0001547g0040 Nicotiana tabacum HOM05D002650 ORTHO05D002924 1.5e-08 62.8 55 54.5
Sc13g0004600 Simmondsia chinensis HOM05D002650 ORTHO05D002924 1.5e-08 62.8 45 66.7
Migut.N00200 Erythranthe guttata HOM05D002650 ORTHO05D002924 2.0e-08 62.4 51 58.8
Hma1.2p1_1572F.1_g291490 Hydrangea macrophylla HOM05D002650 ORTHO05D002924 2.0e-08 62.4 53 60.4
COL.COLO4_21524 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.6e-08 62.0 53 58.5
AUR62033652 Chenopodium quinoa HOM05D002650 ORTHO05D002924 3.4e-08 61.6 53 56.6
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.4e-08 61.6 53 56.6
Peaxi162Scf00092g00119 Petunia axillaris HOM05D002650 ORTHO05D002924 4.4e-08 61.2 61 50.8
Os03g0746500 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 9.8e-08 60.1 36 72.2
AUR62034732 Chenopodium quinoa HOM05D002650 ORTHO05D002924 1.7e-07 59.3 65 44.6
Eucgr.B01054 Eucalyptus grandis HOM05D002650 ORTHO05D002924 1.7e-07 59.3 52 53.8
RcHm_v2.0_Chr1g0322251 Rosa chinensis HOM05D002650 ORTHO05D002924 1.7e-07 59.3 57 56.1
RcHm_v2.0_Chr4g0386441 Rosa chinensis HOM05D002650 ORTHO05D002924 1.7e-07 59.3 57 56.1
Sed0009300 Sechium edule HOM05D002650 ORTHO05D002924 1.7e-07 59.3 52 53.8
EL10Ac3g06476 Beta vulgaris HOM05D002650 ORTHO05D002924 2.2e-07 58.9 56 44.6
FAN22G1889 Fragaria x ananassa HOM05D002650 ORTHO05D002924 2.2e-07 58.9 55 58.2
MSTRG.24731 Avicennia marina HOM05D002650 ORTHO05D002924 2.8e-07 58.5 51 54.9
FvH4_4g00720 Fragaria vesca HOM05D002650 ORTHO05D002924 2.8e-07 58.5 55 58.2
FAN17G0389 Fragaria x ananassa HOM05D002650 ORTHO05D002924 2.8e-07 58.5 55 58.2
TWI09G0495 Tripterygium wilfordii HOM05D002650 ORTHO05D002924 2.8e-07 58.5 53 58.5
Aqoxy5G00427 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 3.7e-07 58.2 59 50.8
HPP92_024843 Vanilla planifolia HOM05D002650 ORTHO05D002924 4.9e-07 57.8 56 58.9
HPP92_026615 Vanilla planifolia HOM05D002650 ORTHO05D002924 4.9e-07 57.8 56 58.9
CAN.G1476.5 Capsicum annuum HOM05D002650 ORTHO05D002924 1.4e-06 56.2 55 49.1
SGA_v2.0_scaffold79G25580 Striga asiatica HOM05D002650 ORTHO05D002924 1.4e-06 56.2 64 50.0
HanXRQChr17g0564431 Helianthus annuus HOM05D002650 ORTHO05D002924 2.4e-06 55.5 46 56.5
Lsat_1_v5_gn_4_29301 Lactuca sativa HOM05D002650 ORTHO05D002924 2.4e-06 55.5 42 61.9
Gohir.D09G220400 Gossypium hirsutum HOM05D002650 ORTHO05D002924 3.1e-06 55.1 44 59.1
Gorai.006G241400 Gossypium raimondii HOM05D002650 ORTHO05D002924 3.1e-06 55.1 44 59.1
PSO210G7121 Papaver somniferum HOM05D002650 ORTHO05D002924 3.1e-06 55.1 44 54.5
Zm00001eb057040 Zea mays HOM05D002650 ORTHO05D002924 3.1e-06 55.1 35 65.7
CsaV3_3G013050 Cucumis sativus L. HOM05D002650 ORTHO05D002924 4.1e-06 54.7 53 54.7
RcHm_v2.0_Chr1g0322241 Rosa chinensis HOM05D002650 ORTHO05D002924 5.4e-06 54.3 57 52.6
MELO3C006514.2 Cucumis melo HOM05D002650 ORTHO05D002924 9.2e-06 53.5 56 50.0
unitig_46.g18610 Utricularia gibba HOM05D002650 ORTHO05D002924 9.2e-06 53.5 37 70.3


User provided reference genes

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