Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 713 100.0
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1095.9 725 80.3
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 8.6e-283 976.9 741 71.0
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 4.4e-279 964.5 741 69.1
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 5.7e-279 964.1 743 68.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 5.7e-279 964.1 742 70.8
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 9.8e-279 963.4 756 68.3
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 3.7e-278 961.4 740 69.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.8e-277 959.1 741 69.1
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 1.8e-277 959.1 747 70.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 2.7e-276 955.3 760 67.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 5.9e-276 954.1 741 68.6
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 3.0e-275 951.8 745 68.5
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 3.9e-275 951.4 747 68.8
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 5.6e-274 947.6 741 68.2
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.6e-273 946.0 740 68.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.8e-273 945.3 745 68.2
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 6.2e-273 944.1 742 68.7
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 8.0e-273 943.7 741 67.7
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 1.0e-272 943.3 741 67.9
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 5.2e-272 941.0 745 68.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 5.2e-272 941.0 728 69.0
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.8e-272 940.6 745 68.6
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 2.6e-271 938.7 741 68.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 1.7e-270 936.0 739 67.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 2.9e-270 935.3 728 69.1
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 2.9e-270 935.3 741 67.5
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 1.4e-269 932.9 742 67.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 1.4e-269 932.9 741 66.9
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.4e-269 931.0 745 67.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 7.0e-269 930.6 745 67.8
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.6e-268 929.5 782 64.8
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 1.6e-268 929.5 741 66.9
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 1.6e-268 929.5 742 67.8
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 2.0e-268 929.1 775 65.7
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-268 927.2 727 68.1
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 1.3e-267 926.4 727 68.2
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 1.7e-267 926.0 727 68.0
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 2.3e-267 925.6 741 67.1
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 2.3e-267 925.6 741 67.1
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.0e-267 925.2 782 64.2
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 1.5e-266 922.9 730 67.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 1.2e-265 919.8 728 68.1
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 2.1e-265 919.1 736 68.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 6.2e-265 917.5 741 66.8
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 6.2e-265 917.5 742 66.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 6.2e-265 917.5 741 66.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 2.3e-264 915.6 743 66.8
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 4.0e-264 914.8 742 66.4
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 4.0e-264 914.8 731 67.0
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 6.8e-264 914.1 726 67.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 1.2e-263 913.3 750 65.7
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 1.2e-263 913.3 731 67.7
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 1.2e-263 913.3 731 67.7
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 2.0e-263 912.5 742 66.4
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 2.0e-263 912.5 731 66.8
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 2.2e-262 909.1 731 67.2
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 6.4e-262 907.5 738 66.9
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 1.1e-261 906.7 740 65.7
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 3.2e-261 905.2 739 66.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 7.8e-260 900.6 731 66.6
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 1.3e-259 899.8 736 67.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 3.0e-259 898.7 743 64.1
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 3.3e-258 895.2 734 65.1
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 4.3e-258 894.8 725 66.2
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 7.3e-258 894.0 741 64.6
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 4.7e-257 891.3 736 66.3
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 8.9e-256 887.1 732 65.4
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 1.2e-255 886.7 731 65.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 1.2e-255 886.7 731 65.4
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 1.2e-255 886.7 741 64.9
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.5e-255 886.3 731 65.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 2.6e-255 885.6 732 65.4
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 3.4e-255 885.2 731 65.4
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 7.6e-255 884.0 731 65.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 1.3e-254 883.2 725 65.2
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 3.7e-254 881.7 725 65.4
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 3.7e-254 881.7 731 65.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 4.9e-254 881.3 731 65.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 1.1e-253 880.2 741 64.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 9.2e-253 877.1 740 64.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 1.9e-250 869.4 750 62.1
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 2.5e-250 869.0 747 62.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 3.6e-249 865.1 759 64.0
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 5.8e-247 857.8 798 61.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 1.2e-244 850.1 725 63.9
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.6e-244 849.7 736 61.8
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 3.0e-243 845.5 765 59.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 1.1e-242 843.6 743 61.9
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 6.9e-240 834.3 767 60.2
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.2e-214 749.6 575 70.1
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.1e-208 728.8 581 68.5
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 3.8e-206 722.2 751 52.9
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 4.3e-202 708.8 751 52.5
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 7.4e-202 708.0 527 71.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.4e-202 708.0 527 71.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 3.7e-201 705.7 728 52.2
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 2.7e-196 689.5 517 72.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.8e-195 686.8 589 62.5
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.8e-193 679.5 728 53.0
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 3.2e-189 666.0 591 62.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.4e-179 634.0 662 55.1
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.2e-168 594.7 336 93.2
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.5e-167 592.4 914 41.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.8e-139 500.7 748 42.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.9e-131 472.2 441 62.8
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.3e-126 458.0 381 65.6
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 2.1e-119 434.1 326 69.9
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.6e-117 426.0 341 64.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.6e-87 326.6 358 52.8
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.7e-85 319.7 778 32.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 3.3e-77 293.9 225 71.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 9.4e-72 275.8 752 30.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-64 251.9 261 54.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.0e-62 244.2 261 53.3
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.1e-59 235.7 233 53.6
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.8e-59 235.0 195 61.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-58 231.1 142 81.7
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.7e-57 228.4 143 79.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 8.6e-57 226.1 296 41.9
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-55 221.9 194 61.9
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-51 208.0 106 87.7
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 5.9e-50 203.4 117 77.8
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.3e-49 202.2 108 80.6
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.0e-42 178.3 102 89.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 3.0e-41 174.5 113 80.5
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-40 172.2 112 79.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-40 170.6 147 66.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.5e-40 169.5 111 80.2
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.6e-39 168.7 97 87.6
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.6e-39 168.7 113 78.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-37 162.5 143 65.7
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.2e-37 162.5 85 83.5
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.0e-37 161.8 85 82.4
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 2.2e-36 158.3 99 80.8
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 7.0e-35 153.3 82 95.1
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.5e-32 144.8 252 41.7
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-30 138.7 95 74.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 4.3e-24 117.5 238 35.3
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 9.5e-24 116.3 238 34.9
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 3.6e-23 114.4 238 34.9
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.4e-22 112.5 238 34.0
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 4.1e-19 100.9 71 73.2
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.1e-19 100.1 54 81.5
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.2e-18 99.4 71 71.8
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.4e-13 81.3 145 40.0


User provided reference genes

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