Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 3006.1 1505 100.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 2248.4 1511 73.9
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 2124.4 1505 70.5
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 2119.4 1535 70.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 2088.2 1530 68.7
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2077.8 1459 70.7
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 2065.8 1500 69.7
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 2023.1 1506 67.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 2013.4 1508 66.8
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 2011.9 1501 66.8
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1995.7 1499 67.2
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1987.6 1544 67.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1941.8 1515 65.5
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1936.0 1506 65.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1925.2 1506 65.1
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1923.3 1502 65.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1921.7 1504 65.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1920.6 1517 65.6
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1917.5 1611 61.3
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1906.3 1504 64.6
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1899.0 1509 62.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1892.5 1515 65.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1890.2 1511 63.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1889.0 1513 63.8
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1885.2 1498 65.2
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1878.6 1509 62.3
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1875.1 1516 64.7
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1864.4 1510 63.6
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1858.2 1508 62.9
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1842.8 1503 63.5
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1828.9 1507 62.2
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1824.7 1500 61.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1820.8 1499 62.7
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1809.3 1533 60.9
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1807.0 1498 61.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1803.1 1498 60.6
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1803.1 1499 61.5
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1802.7 1423 64.7
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1801.2 1499 61.5
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1792.3 1503 60.8
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1787.7 1498 61.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1783.5 1497 60.1
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1777.3 1513 60.7
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1775.8 1498 61.1
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1770.0 1506 60.4
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1766.1 1284 68.5
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1765.0 1509 60.4
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1762.7 1526 59.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1762.7 1526 59.6
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1758.8 1504 61.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1746.9 1502 60.3
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1744.6 1506 60.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1740.3 1513 57.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1731.8 1492 58.4
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1730.7 1497 58.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1729.9 1519 57.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1728.0 1512 57.5
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1723.8 1502 58.7
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1719.5 1512 57.3
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1713.4 1202 72.0
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1696.4 1527 56.3
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1654.0 1453 58.2
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1635.5 1235 66.8
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1584.7 1497 54.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1583.9 1752 48.8
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1582.4 1507 54.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1572.4 1505 53.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1563.1 1514 54.8
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1556.6 1515 54.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1541.9 1512 54.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1530.0 1507 53.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1519.2 1518 53.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1518.8 1515 53.4
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1516.1 1518 53.3
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1513.8 1521 53.5
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1513.8 1392 58.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1512.3 1521 53.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1510.0 1545 52.5
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1500.3 1507 54.7
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1497.6 1550 52.1
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1488.8 1051 72.0
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1476.1 1519 52.8
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1469.9 1553 52.5
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1466.4 1160 64.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1463.4 1532 51.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1439.5 1549 50.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1424.5 1135 64.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1408.7 1098 65.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1372.5 1291 56.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1510 47.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1322.0 1119 62.1
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1254.2 983 65.8
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.4e-298 1030.4 1141 48.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.6e-283 980.3 1146 46.9
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.3e-264 917.5 1537 37.5
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.1e-254 883.6 973 49.2
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.3e-252 876.3 1552 37.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.3e-251 872.1 601 73.0
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 7.7e-249 865.1 1545 36.6
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 5.5e-247 859.0 1019 47.9
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 8.8e-245 851.7 591 72.3
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-238 831.2 572 72.2
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.0e-228 797.3 640 64.8
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-220 771.2 1021 45.5
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.5e-220 771.2 1023 45.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 7.5e-220 768.8 1022 45.4
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.7e-211 741.1 568 65.0
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 6.3e-211 739.2 1394 34.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.9e-200 703.4 619 59.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 6.9e-165 586.3 482 63.5
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 2.0e-164 584.7 1038 36.9
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.9e-164 582.4 575 54.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-143 515.0 570 50.2
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 4.6e-137 493.8 564 47.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.6e-129 468.8 529 50.3
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.9e-114 418.7 504 47.8
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-112 410.6 1045 29.4
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 4.8e-102 377.5 322 64.0
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-99 369.4 455 47.0
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.8e-97 361.7 326 55.2
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.8e-95 353.2 542 38.0
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 2.4e-93 348.6 370 50.5
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 5.6e-90 337.4 451 46.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 4.0e-88 331.3 802 32.2
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-85 322.8 407 48.4
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.6e-84 319.3 303 52.8
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.8e-84 317.0 322 49.4
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 6.2e-81 307.4 274 55.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 8.0e-81 307.0 388 47.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.8e-80 305.8 463 38.0
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.2e-79 303.1 213 67.1
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.1e-77 293.9 372 43.3
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.7e-76 292.0 212 69.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.5e-74 286.2 244 59.8
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.1e-64 251.9 292 48.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-63 250.0 227 58.6
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 5.8e-63 247.7 283 47.7
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 8.4e-62 243.8 193 62.7
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.9e-55 220.3 316 39.9
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-49 201.4 193 54.9
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 9.3e-45 187.2 182 57.1
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 4.6e-44 184.9 182 54.9
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 7.9e-44 184.1 111 80.2
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.0e-43 183.7 131 65.6
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.3e-43 183.3 186 53.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 1.1e-42 180.3 386 34.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 3.3e-42 178.7 124 71.0
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.9e-37 162.9 126 61.1
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.5e-37 162.5 117 62.4
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 4.2e-37 161.8 200 45.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 5.5e-37 161.4 149 55.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.5e-34 153.3 116 65.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 3.7e-33 148.7 115 63.5
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-22 113.6 98 63.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 6.5e-22 111.3 98 62.2
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.2e-20 107.1 767 21.9
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-20 104.8 249 30.5
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.5e-13 82.8 61 62.3
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 5.7e-10 71.6 195 30.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 1.1e-08 67.4 67 50.7
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-07 63.5 104 34.6
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 1.5e-07 63.5 68 51.5
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.5e-07 62.4 42 69.0
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 2.2e-06 59.7 104 33.7
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 2.9e-06 59.3 44 65.9
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 3.8e-06 58.9 143 31.5
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.5e-06 57.8 65 46.2


User provided reference genes

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