Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 5.9e-188 660.6 308 100.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.8e-173 612.5 308 91.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.1e-173 611.7 308 92.2
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.3e-173 610.9 308 91.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.6e-172 609.4 308 91.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.0e-172 609.0 308 91.9
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.6e-172 608.6 308 92.2
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 3.5e-172 608.2 308 91.2
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 5.9e-172 607.4 308 91.6
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.7e-172 607.1 308 92.9
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.2e-171 605.5 308 91.6
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.9e-171 605.1 308 91.6
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.9e-171 605.1 308 91.2
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 3.8e-171 604.7 308 91.6
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.1e-170 603.2 308 92.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.5e-170 602.8 308 90.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.5e-170 602.8 308 91.2
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.9e-170 602.4 308 90.3
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.5e-170 602.1 307 91.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.5e-170 602.1 307 91.2
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-170 600.9 308 89.9
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 5.5e-170 600.9 308 90.6
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 9.4e-170 600.1 308 90.3
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.4e-170 600.1 308 90.9
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.2e-169 599.7 308 90.3
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.2e-169 599.7 308 89.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-169 599.4 308 89.6
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.6e-169 599.4 308 90.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.6e-169 599.4 308 90.3
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.1e-169 599.0 308 90.9
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.1e-169 599.0 308 90.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.1e-169 599.0 308 90.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.6e-169 598.2 308 90.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.6e-169 598.2 308 90.6
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.6e-169 598.2 308 90.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 3.6e-169 598.2 308 89.9
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 6.1e-169 597.4 309 90.6
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 6.1e-169 597.4 308 89.9
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.0e-169 597.0 308 90.3
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.0e-168 596.7 308 90.3
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-168 596.3 308 90.3
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.4e-168 596.3 308 89.3
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.0e-168 594.7 308 89.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 5.2e-168 594.3 308 89.0
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.2e-168 594.3 308 89.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.7e-168 594.0 308 89.9
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 6.7e-168 594.0 314 88.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 8.8e-168 593.6 308 89.9
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-167 593.2 308 90.3
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.2e-167 593.2 308 89.0
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.6e-167 592.0 308 88.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.6e-167 592.0 336 83.9
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.3e-167 591.7 308 89.3
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 3.3e-167 591.7 308 89.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 4.4e-167 591.3 308 88.3
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.4e-167 591.3 307 88.3
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 4.4e-167 591.3 307 88.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 5.7e-167 590.9 316 88.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 5.7e-167 590.9 307 88.6
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.5e-167 590.5 308 89.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 7.5e-167 590.5 308 89.0
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 7.5e-167 590.5 307 88.3
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 9.7e-167 590.1 308 88.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 9.7e-167 590.1 308 88.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.7e-166 589.3 305 89.5
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.7e-166 589.3 308 89.3
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.7e-166 589.3 308 89.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.7e-166 588.2 308 88.0
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 4.8e-166 587.8 308 88.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.8e-166 587.8 308 88.3
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.3e-166 587.4 308 88.6
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.3e-166 587.4 308 88.6
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 6.3e-166 587.4 308 88.3
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.3e-166 587.4 308 88.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 6.3e-166 587.4 308 88.3
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.1e-165 585.1 308 88.6
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.1e-165 585.1 308 87.7
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.1e-165 584.7 308 88.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 4.1e-165 584.7 308 87.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.1e-165 584.7 308 88.0
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 5.3e-165 584.3 308 87.3
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.0e-165 583.9 308 88.6
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.2e-164 583.2 306 88.2
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-164 583.2 308 87.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.6e-164 582.8 338 82.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.0e-164 582.4 308 86.7
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.0e-164 582.4 308 88.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.7e-164 582.0 308 87.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.5e-164 581.6 308 87.3
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-163 579.7 308 87.0
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-163 579.7 308 87.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.3e-163 579.7 308 87.0
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.7e-163 579.3 368 76.9
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 2.9e-163 578.6 308 87.3
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.9e-163 578.6 308 85.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.0e-163 577.8 308 88.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.5e-162 575.5 308 86.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 8.8e-160 567.0 310 84.8
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.4e-159 565.1 291 90.4
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 9.8e-159 563.5 308 85.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.8e-158 561.2 308 85.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 8.3e-158 560.5 312 84.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-156 556.6 285 91.2
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.3e-155 552.4 285 90.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.5e-154 548.9 285 90.2
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.0e-152 543.5 304 83.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.8e-152 542.7 310 84.8
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.0e-152 541.6 312 83.3
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-149 533.5 285 86.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.4e-149 533.1 285 86.7
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.4e-149 532.3 285 87.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.1e-149 531.9 466 60.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 4.5e-148 528.1 308 78.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.3e-147 526.6 306 78.4
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.3e-147 525.8 308 78.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 6.6e-147 524.2 308 81.2
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.6e-147 524.2 306 77.8
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.1e-145 519.2 308 79.5
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.6e-145 518.5 461 59.4
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.7e-145 518.1 513 54.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.8e-143 511.1 307 76.5
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 6.8e-136 487.6 249 88.0
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 6.6e-123 444.5 308 68.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.3e-122 442.2 245 83.7
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.7e-121 438.3 307 67.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.8e-120 436.4 310 65.8
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.4e-117 426.8 308 70.1
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.4e-104 383.6 212 84.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-104 383.3 210 86.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.5e-103 380.2 211 84.8
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.8e-99 366.7 313 58.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.5e-98 363.6 210 81.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.4e-96 357.1 308 57.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.0e-91 339.3 292 54.5
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.9e-86 322.0 182 83.5
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.4e-80 303.1 172 82.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.0e-70 271.2 154 83.1
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.3e-67 260.0 127 93.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.0e-66 256.9 300 45.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.8e-65 253.1 321 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-64 251.1 313 43.8
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.8e-64 250.4 339 40.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.1e-64 249.6 315 41.9
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.0e-59 234.6 300 42.7
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 9.1e-56 221.5 185 63.2
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.2e-54 216.9 326 39.6
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 6.1e-52 208.8 247 42.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 9.1e-48 194.9 121 80.2
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 8.5e-46 188.3 161 61.5
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 6.6e-30 135.6 98 70.4
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.3e-25 121.3 56 92.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 8.3e-25 118.6 161 46.0
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.8e-20 103.6 68 76.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 7.5e-18 95.5 98 58.2
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.6e-15 86.3 49 75.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.8e-11 74.3 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.2e-09 67.4 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 9.2e-08 62.0 31 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.5e-07 60.1 85 43.5
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 6.6e-06 55.8 27 81.5


User provided reference genes

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