Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 2100.1 1053 100.0
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1704.9 1057 81.0
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1689.9 1055 79.8
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1679.1 1054 78.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1675.2 1054 78.3
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1672.1 1055 78.1
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1671.8 1057 79.2
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1661.7 1054 77.4
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1656.0 1055 78.3
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1649.8 1055 77.6
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1648.6 1052 77.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1643.6 1054 78.1
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1632.5 1055 77.3
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1630.2 1057 77.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1627.1 1053 76.8
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1624.8 1054 76.9
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1622.1 1058 75.6
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1617.1 1057 76.5
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1613.6 1055 76.1
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1610.9 1058 75.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1607.4 1055 75.7
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1604.0 1056 75.1
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1602.8 1054 75.3
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1602.0 1055 75.5
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1598.6 1147 71.7
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1588.5 1074 74.2
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1587.0 1074 74.1
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1585.9 1120 72.0
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1577.8 1054 74.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1571.2 1055 74.3
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1570.1 1062 74.3
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1569.7 1055 75.0
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1567.7 959 81.4
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1563.5 1055 74.7
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 1052 73.5
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 1141 70.2
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1562.0 1055 74.1
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1557.3 1055 73.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1557.0 1055 72.7
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1556.6 1056 74.0
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1553.9 1045 73.8
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1551.2 1052 73.1
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1133 70.5
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1547.3 1052 72.9
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1547.3 1040 74.6
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1546.9 1062 72.9
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1546.9 1058 72.6
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1544.3 1062 72.8
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1543.5 1039 75.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1541.6 1061 73.6
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1540.4 1061 72.8
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1536.9 1052 71.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1054 72.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1053 72.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1528.8 1057 72.9
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1056 70.8
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1521.9 1058 70.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1055 70.9
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1518.1 1055 70.3
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1508.0 1055 72.9
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1508.0 1060 72.1
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1505.3 1056 71.7
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1055 71.1
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1503.4 1055 70.7
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1499.6 1055 69.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1499.2 1056 69.8
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1498.8 1055 72.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1498.4 1055 69.6
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1498.4 1060 71.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1497.6 1052 71.5
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1490.3 1056 69.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 1056 69.3
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1484.5 946 78.8
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1479.9 1055 70.6
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1478.4 1056 71.5
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1478.0 1065 71.0
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1475.3 1056 69.8
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1061 70.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1463.4 978 74.3
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1066 69.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1058 68.1
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1451.4 1059 67.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 1095 66.5
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1433.7 1262 58.7
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1429.5 1056 69.3
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1421.4 1064 66.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1356.7 864 78.9
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1343.6 845 78.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1317.8 1054 63.9
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1289.6 801 79.8
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1271.1 852 73.9
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1167.5 791 72.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1116.7 1073 54.4
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1107.0 958 61.5
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1104.0 789 70.3
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 0.0e+00 1094.3 1064 53.7
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 9.6e-299 1030.4 1076 51.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.2e-282 976.1 777 63.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 5.5e-270 934.9 949 55.8
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.0e-268 930.6 633 73.5
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.5e-246 857.1 659 65.3
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.1e-241 839.0 518 78.2
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.0e-240 836.6 517 76.6
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.6e-223 778.1 695 58.0
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-214 750.7 450 77.8
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.9e-214 750.4 470 74.9
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.5e-214 750.0 450 77.6
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 8.1e-213 745.0 453 77.3
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 3.8e-210 736.1 465 75.1
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.5e-208 729.6 496 69.8
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-206 723.4 450 74.7
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 6.2e-205 718.8 452 74.6
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 5.3e-204 715.7 450 76.2
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.1e-196 691.4 450 73.6
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.8e-196 690.6 448 72.5
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-188 664.5 470 68.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.3e-173 614.8 428 71.5
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 2.4e-172 610.5 458 65.5
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.9e-171 605.9 450 66.4
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 3.6e-168 596.7 450 64.7
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 2.0e-166 590.9 400 74.2
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 8.8e-159 565.5 366 74.0
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 5.3e-156 556.2 366 73.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.5e-155 553.1 405 69.4
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 5.9e-155 552.7 613 51.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 3.2e-145 520.4 1118 32.6
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.9e-125 454.1 267 81.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.4e-119 435.3 242 88.4
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 7.0e-116 422.9 286 73.4
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.1e-111 407.5 271 74.9
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.3e-103 381.3 266 73.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.3e-103 381.3 243 77.4
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.0e-103 380.6 216 86.1
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 5.8e-102 376.7 237 79.3
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.0e-98 365.9 318 61.9
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 7.4e-73 280.0 155 84.5
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 6.0e-67 260.4 210 61.4
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 3.3e-65 254.6 286 48.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 3.6e-59 234.6 206 62.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 5.1e-50 204.1 172 62.2
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 2.0e-49 202.2 182 64.8
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.4e-46 191.4 155 61.3
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.3e-45 189.5 195 54.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.7e-43 181.8 121 71.1
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.2e-38 166.4 110 77.3
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.8e-34 152.5 106 72.6
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.2e-32 145.6 97 76.3
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.4e-31 142.9 137 55.5
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 4.1e-31 141.4 137 55.5
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 3.6e-27 128.3 96 64.6
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.0e-26 126.7 83 67.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 8.8e-26 123.6 88 62.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 9.8e-25 120.2 96 61.5
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 6.5e-21 107.5 55 87.3
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.1e-19 100.9 62 79.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 3.0e-18 98.6 81 59.3
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 8.8e-18 97.1 77 62.3
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.0e-17 95.9 58 72.4
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 2.0e-17 95.9 76 63.2
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 7.5e-17 94.0 53 83.0
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 9.8e-17 93.6 83 51.8
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 9.2e-15 87.0 56 66.1
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 2.7e-14 85.5 76 60.5
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.0e-13 83.6 74 59.5
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 4.3e-12 78.2 79 53.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.1e-11 74.3 74 54.1
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 1.5e-09 69.7 41 75.6
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 4.9e-08 64.7 44 65.9
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 6.4e-08 64.3 48 68.8
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 1.4e-07 63.2 85 41.2
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 2.0e-06 59.3 39 71.8
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.8e-06 57.4 58 50.0


User provided reference genes

Program Settings