Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 9.4e-98 360.5 230 100.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.4e-87 324.3 231 81.0
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.2e-86 322.8 231 79.2
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.8e-86 322.4 231 74.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 78.4
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 78.4
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.4e-85 319.3 231 77.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.4e-85 319.3 231 80.5
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.1e-85 318.5 246 73.6
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 9.1e-85 317.4 231 77.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.6e-84 315.8 235 77.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 4.5e-84 315.1 233 77.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.9e-84 314.7 231 80.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.8e-83 312.0 232 79.7
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 5.0e-83 311.6 231 86.1
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.0e-83 311.6 231 79.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-82 310.5 231 78.8
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.5e-82 310.1 233 88.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.9e-82 309.7 231 78.4
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.2e-82 308.9 231 80.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.2e-82 308.9 231 76.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.2e-82 308.9 231 75.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 4.2e-82 308.5 232 79.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 5.5e-82 308.1 231 77.9
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.2e-82 307.8 231 71.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 7.2e-82 307.8 231 78.8
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 7.2e-82 307.8 232 78.0
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 7.2e-82 307.8 232 77.2
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 9.4e-82 307.4 231 75.3
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 9.4e-82 307.4 231 77.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.2e-81 307.0 231 76.6
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.1e-81 306.2 231 78.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.6e-81 305.4 231 74.5
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.7e-81 305.1 231 75.8
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 6.1e-81 304.7 231 73.6
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 8.0e-81 304.3 231 76.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 8.0e-81 304.3 231 77.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.0e-80 303.9 231 76.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.3e-80 302.8 231 77.5
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.3e-80 302.8 231 73.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.0e-80 302.4 233 70.4
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.0e-80 302.0 232 78.4
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.7e-80 301.2 231 71.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 6.7e-80 301.2 231 75.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 6.7e-80 301.2 231 79.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 8.8e-80 300.8 231 78.8
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 1.2e-79 300.4 236 75.8
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.5e-79 300.1 231 73.6
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 232 80.2
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.0e-79 299.7 232 74.1
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.0e-79 299.7 231 77.9
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.6e-79 299.3 232 74.1
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.3e-79 298.9 232 78.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.4e-79 298.5 232 73.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 4.4e-79 298.5 232 73.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 4.4e-79 298.5 232 73.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.5e-79 297.7 231 78.4
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 9.7e-79 297.4 232 79.7
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 9.7e-79 297.4 231 76.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.7e-79 297.4 234 85.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 9.7e-79 297.4 234 85.9
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.3e-78 297.0 232 73.7
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.3e-78 297.0 232 80.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.3e-78 297.0 231 77.1
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.2e-78 296.2 231 75.3
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.2e-78 296.2 234 77.4
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 3.7e-78 295.4 231 72.3
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.7e-78 295.4 236 80.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.8e-78 295.0 230 73.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.8e-78 295.0 233 83.3
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 6.3e-78 294.7 232 73.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 6.3e-78 294.7 232 74.6
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 6.3e-78 294.7 232 73.7
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.2e-78 294.3 234 77.4
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 8.2e-78 294.3 244 73.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 8.2e-78 294.3 231 74.9
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-77 293.9 232 73.7
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.1e-77 293.9 231 78.4
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.4e-77 293.5 232 82.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-77 293.1 232 73.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.8e-77 293.1 232 73.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.8e-77 293.1 233 79.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.8e-77 293.1 235 75.7
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.4e-77 292.7 232 78.0
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.1e-77 292.4 231 81.8
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.1e-77 292.4 233 72.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.1e-77 292.4 232 77.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 73.8
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 73.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 72.5
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.3e-77 291.6 234 69.7
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 5.3e-77 291.6 233 74.2
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 5.3e-77 291.6 234 71.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.6e-76 290.0 235 74.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.6e-76 290.0 231 69.7
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.5e-76 288.5 234 68.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 5.9e-76 288.1 233 74.2
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.9e-76 288.1 234 74.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.9e-76 288.1 233 74.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.9e-76 288.1 231 77.9
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.0e-75 287.3 231 82.3
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-75 287.0 231 79.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-75 287.0 234 74.4
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.1e-74 283.9 234 71.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 70.4
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 70.4
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.7e-73 279.3 231 83.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.0e-72 277.3 231 73.2
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-72 276.6 231 83.1
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.0e-72 275.4 231 77.1
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-72 275.4 233 71.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 6.8e-72 274.6 271 71.6
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.8e-72 274.6 231 72.3
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 8.8e-72 274.2 231 72.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.8e-72 274.2 231 82.7
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.5e-71 273.5 232 73.7
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-71 273.5 231 82.3
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.5e-71 273.5 231 75.3
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.7e-71 271.6 285 57.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 5.7e-71 271.6 251 61.8
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.5e-71 271.2 231 71.9
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 7.5e-71 271.2 232 71.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.2e-70 269.6 227 76.2
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.4e-69 266.9 238 72.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.8e-69 266.5 231 81.8
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.4e-69 266.2 231 81.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.4e-69 266.2 230 64.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 5.4e-69 265.0 232 76.7
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 2.7e-68 262.7 231 80.5
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 4.5e-68 261.9 231 68.8
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 4.5e-68 261.9 232 71.6
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.3e-66 255.8 235 64.3
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-65 253.4 233 75.5
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.0e-64 249.2 218 69.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 8.9e-64 247.7 234 65.4
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.2e-60 237.3 230 62.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.8e-56 223.4 233 62.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-52 210.3 254 66.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.9e-50 203.4 188 70.2
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.5e-50 203.0 187 73.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.3e-50 202.6 121 87.6
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.3e-50 202.6 190 68.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.0e-49 198.0 230 57.8
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.0e-48 195.7 121 85.1
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.8e-48 194.9 236 57.6
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.8e-47 191.8 121 81.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.7e-46 190.3 121 81.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 7.0e-45 184.9 120 81.7
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-41 174.1 113 82.3
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-41 173.7 113 81.4
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 8.1e-41 171.4 235 51.9
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-40 170.2 113 80.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 5.2e-40 168.7 121 74.4
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 8.3e-38 161.4 241 49.0
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.6e-33 146.0 156 67.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.6e-31 139.8 71 93.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.7e-30 137.1 71 93.0
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.2e-30 136.7 71 91.5
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.4e-29 134.0 71 88.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 6.0e-28 128.6 139 62.6
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 5.1e-27 125.6 72 84.7
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-26 122.5 179 59.2
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.1e-24 116.3 72 80.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.4e-22 108.6 73 72.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-21 107.1 70 77.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.2e-21 106.3 227 38.3
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.6e-20 104.0 73 79.5
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.0e-19 101.3 64 76.6
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.3e-19 100.1 180 46.7
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 5.1e-19 99.0 230 38.3
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.9e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.3e-14 84.3 56 76.8
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.6e-09 67.4 94 51.1
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.1e-09 67.0 93 47.3
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 2.8e-09 66.6 48 62.5
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.0e-06 58.2 65 47.7


User provided reference genes

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