Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 2045.4 1038 100.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1785.8 1043 87.4
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1770.7 1037 86.5
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1734.9 1043 85.5
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1723.8 1020 85.9
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1723.0 1050 84.7
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1719.9 1045 84.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1716.8 1044 84.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1700.3 1044 84.0
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1699.5 1043 83.6
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1699.1 1020 85.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1696.0 1047 83.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1689.1 1034 83.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1684.8 1048 82.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1680.6 1035 82.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1679.8 1032 82.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1679.8 1048 82.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1679.1 1062 81.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1679.1 1035 82.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1047 81.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1019 83.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1057 81.8
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1062 81.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1674.4 1039 83.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1673.7 1039 83.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1673.3 1040 82.2
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1672.9 1052 81.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1670.2 1037 82.0
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1668.7 1048 82.8
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1662.5 1069 79.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1655.2 1043 81.8
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1654.0 1046 80.7
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1650.6 1063 81.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1650.6 1054 80.7
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1650.2 1069 80.0
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1647.5 1056 80.5
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1646.7 1033 80.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1644.4 1043 80.4
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1643.2 1043 80.1
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1642.5 1054 80.6
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1635.9 1055 80.9
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1635.5 1050 81.3
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1630.9 1023 81.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1630.2 1049 79.9
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1629.0 1033 79.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1627.5 1044 80.4
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1626.7 1035 79.8
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1626.3 1064 78.9
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1624.8 1032 80.2
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1621.7 1048 79.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1620.5 1044 79.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1618.6 1049 79.6
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1616.3 1042 78.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1049 79.2
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1612.4 1073 77.7
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1599.3 1041 79.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1597.4 1042 78.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1595.5 1051 77.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1051 78.3
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1592.4 1052 79.3
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1587.8 1045 78.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1587.8 1055 78.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1586.2 1056 78.5
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1585.9 1050 78.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1585.9 1046 78.2
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1585.5 1036 78.9
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1583.5 1053 78.3
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1583.5 1042 78.8
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1582.8 1054 77.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1051 78.3
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1041 77.7
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1580.1 1051 77.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1052 77.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1054 77.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1051 77.9
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1565.1 1041 76.9
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1051 77.5
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1048 76.1
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1053 77.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1061 76.5
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1021 78.0
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1058 76.3
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1043 77.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1058 76.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1059 76.5
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1054 77.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1052 77.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1052 77.3
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1048 75.7
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1057 76.1
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1057 76.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1542.3 1053 76.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1540.0 1055 76.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1538.1 1055 76.1
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1535.4 1152 70.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1096 74.1
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1525.4 1017 76.1
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1094 74.0
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1061 74.5
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1486.5 1025 74.2
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1466.8 1019 73.5
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1409.8 1044 71.0
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1408.7 1048 72.9
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1389.8 937 76.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1370.5 959 73.5
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1349.0 1031 69.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1337.0 960 70.5
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1335.9 1010 69.9
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1332.8 1019 69.4
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1323.9 1032 67.5
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1284.6 1016 64.9
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1235.3 838 75.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1128.2 1020 58.3
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1092.0 1021 58.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1088.9 763 75.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.8e-311 1072.0 1022 55.3
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.7e-309 1065.4 629 87.0
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 2.7e-301 1038.9 1032 54.9
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.8e-297 1026.2 719 71.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 8.3e-295 1017.3 725 70.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-291 1004.6 1011 56.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-275 953.7 1033 52.7
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 4.7e-274 948.3 620 76.6
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-270 936.0 1035 52.1
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.3e-270 934.1 963 56.8
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 7.3e-267 924.5 1026 52.7
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.5e-246 856.3 554 78.2
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 2.3e-244 849.7 479 89.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 8.5e-223 778.1 438 89.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-209 733.4 1033 45.8
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.2e-192 677.9 437 78.5
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.8e-188 662.1 1014 42.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 7.8e-184 648.7 399 79.7
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 8.0e-181 638.6 386 84.2
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-177 626.3 481 69.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.8e-172 610.9 507 60.7
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.2e-163 581.6 455 67.0
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.2e-163 581.6 1050 37.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.8e-155 552.7 410 68.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 373 71.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-142 510.8 367 71.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-142 510.8 367 71.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-138 498.0 372 71.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 3.2e-137 493.8 509 58.2
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.8e-135 488.0 322 75.8
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 3.7e-133 480.3 565 51.5
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 3.2e-129 467.2 586 46.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 5.9e-123 446.4 665 43.0
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 9.4e-121 439.1 1074 31.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 6.3e-109 399.8 277 74.0
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.9e-105 388.3 290 67.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.3e-93 346.3 281 66.2
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 7.7e-91 339.7 195 86.7
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-84 318.9 517 42.2
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.8e-76 292.0 507 36.5
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.5e-73 281.6 397 45.3
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-72 279.3 419 44.4
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.8e-71 275.4 185 77.3
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-66 258.8 227 63.9
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.4e-63 249.2 135 89.6
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-60 238.8 217 62.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-58 232.3 306 47.7
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 4.4e-54 217.6 138 78.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.7e-53 215.7 127 85.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-50 205.7 162 69.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 4.9e-45 187.6 191 50.3
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 5.4e-44 184.1 143 69.2
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.8e-37 161.4 202 47.0
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-35 156.4 176 53.4
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.3e-32 146.4 253 40.3
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-32 145.6 127 63.8
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.2e-29 135.6 91 76.9
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.3e-26 126.3 88 68.2
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 7.4e-25 120.6 267 34.5
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.8e-15 89.4 106 47.2
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.5e-14 84.7 55 80.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.8e-13 81.6 72 51.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 5.1e-10 71.2 62 54.8
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 8.7e-10 70.5 49 67.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 8.7e-10 70.5 115 36.5


User provided reference genes

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