Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.1e-294 1015.0 528 100.0
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 4.0e-221 771.5 513 76.8
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.2e-219 765.8 529 75.0
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.4e-218 763.1 526 74.9
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-217 760.0 529 76.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 3.3e-207 725.3 529 71.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.8e-206 721.5 529 72.0
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.3e-206 721.1 529 72.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.4e-205 719.2 529 72.2
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.1e-205 718.8 529 73.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.1e-205 718.4 539 71.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 2.6e-204 715.7 539 70.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 7.7e-204 714.1 529 71.3
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 1.0e-203 713.8 538 70.8
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 4.2e-202 708.4 550 68.7
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.5e-202 708.0 534 71.2
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 7.2e-202 707.6 529 70.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.3e-200 702.6 540 67.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.3e-199 698.7 539 68.1
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 4.4e-199 698.4 539 68.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.8e-198 695.7 533 70.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 3.7e-198 695.3 540 70.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 8.5e-195 684.1 529 68.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-194 683.7 539 67.0
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 3.2e-194 682.2 542 68.3
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.2e-193 680.2 533 66.8
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.6e-193 679.9 516 69.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.1e-193 679.5 531 70.4
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.6e-193 678.7 531 70.4
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.1e-191 673.7 526 67.9
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.3e-191 672.2 525 65.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.2e-190 669.5 526 67.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-190 669.5 566 64.0
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.7e-190 668.7 528 67.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 4.8e-190 668.3 528 67.0
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 4.8e-190 668.3 526 66.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.4e-189 666.8 549 66.5
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.1e-189 665.6 529 67.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.2e-188 663.7 540 67.2
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.7e-187 659.8 530 65.5
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.9e-187 659.1 559 65.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.0e-187 658.3 528 65.5
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 8.5e-187 657.5 534 64.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 6.1e-185 651.4 528 66.5
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.4e-184 650.2 530 66.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.8e-184 649.8 528 64.8
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.0e-184 649.0 531 65.3
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.2e-184 648.3 534 64.8
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 3.3e-183 645.6 563 62.3
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.7e-182 642.1 530 65.1
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.7e-182 642.1 532 64.5
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 8.2e-182 641.0 469 71.9
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 8.2e-182 641.0 548 63.9
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 3.1e-181 639.0 525 64.8
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.3e-181 638.3 574 60.1
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 9.1e-181 637.5 541 63.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.9e-180 634.8 549 62.1
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 6.5e-179 631.3 531 65.2
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.2e-177 627.1 529 65.8
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.6e-177 626.7 544 65.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.7e-177 625.2 535 63.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.0e-176 624.0 531 65.2
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.3e-176 622.9 529 64.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.3e-174 617.1 528 63.8
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.8e-174 615.9 528 64.6
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.8e-173 613.2 531 64.0
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.4e-173 612.8 528 61.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.1e-173 612.5 530 62.5
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.9e-171 605.9 515 65.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 6.6e-171 604.7 529 63.7
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 8.6e-171 604.4 540 62.4
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.6e-169 600.1 527 63.6
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.0e-168 595.5 528 61.6
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.6e-167 592.8 533 63.2
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 5.7e-167 591.7 518 63.3
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 9.8e-167 590.9 542 60.5
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.3e-166 590.5 538 60.4
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.9e-166 588.6 551 60.3
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.3e-163 579.7 567 56.6
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-162 577.4 533 59.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 5.6e-162 575.1 533 60.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.1e-161 573.2 533 60.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 6.1e-161 571.6 533 60.2
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.8e-160 570.1 530 59.8
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 8.9e-160 567.8 552 58.2
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.0e-159 566.6 533 59.8
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.4e-159 565.8 532 60.0
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-158 563.5 534 58.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 6.4e-158 561.6 534 58.6
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-157 559.7 534 58.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 9.2e-157 557.8 534 58.4
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.7e-155 553.5 536 61.8
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.0e-155 552.0 528 59.7
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 7.3e-154 548.1 534 57.7
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-152 543.9 536 57.3
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-152 543.5 504 59.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.0e-152 542.3 415 66.7
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-150 537.3 513 60.0
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.9e-149 533.5 534 56.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 4.6e-148 528.9 536 56.3
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 6.0e-148 528.5 539 56.4
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.8e-145 519.6 532 56.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 7.5e-143 511.5 401 68.1
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.9e-142 509.6 529 55.6
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.2e-141 506.1 534 57.3
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 9.5e-138 494.6 518 54.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 2.7e-132 476.5 534 52.8
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.2e-125 452.6 326 72.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.1e-125 451.8 532 50.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.0e-115 421.4 367 63.2
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 6.4e-110 402.1 461 52.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.2e-109 399.4 249 79.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 7.4e-106 388.7 390 55.4
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 7.6e-103 378.6 250 77.2
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-101 374.4 526 45.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.8e-99 367.5 251 74.1
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.1e-90 338.2 250 69.2
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 7.2e-85 318.9 275 62.5
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 8.2e-81 305.4 272 58.5
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-77 294.7 282 57.8
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-76 291.6 231 68.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.9e-71 272.7 282 58.2
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.9e-70 270.4 281 55.9
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.1e-69 268.5 572 35.5
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.5e-69 266.2 242 60.7
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.2e-66 258.5 274 52.6
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 7.5e-66 255.8 256 56.2
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.0e-64 249.2 233 61.8
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-60 238.4 261 51.7
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.1e-60 237.7 279 54.5
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 7.7e-55 219.2 194 59.8
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.6e-52 211.5 275 46.9
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 8.9e-51 205.7 436 35.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.6e-50 204.1 211 56.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.4e-48 197.6 473 33.4
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.0e-46 189.9 165 61.2
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-43 181.0 151 62.3
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.8e-43 179.5 257 47.5
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.9e-41 174.1 144 66.0
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.4e-40 171.0 602 28.4
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 3.3e-37 160.6 97 82.5
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 2.1e-36 157.9 152 53.3
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.4e-33 146.4 210 43.8
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.7e-31 141.0 112 65.2
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.6e-31 140.2 203 42.9
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 4.6e-31 140.2 174 46.0
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.0e-30 137.5 160 48.8
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 3.0e-30 137.5 123 56.9
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.9e-30 137.1 256 43.4
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.4e-27 128.6 122 57.4
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 2.9e-25 120.9 113 57.5
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.6e-23 115.2 138 49.3
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-23 115.2 175 42.3
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-22 111.3 83 67.5
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.9e-19 99.4 82 67.1
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-17 95.5 77 63.6
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.1e-15 88.2 89 53.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.3e-14 85.5 173 35.3
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.3e-14 85.5 60 78.3
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.6e-12 78.6 214 32.7
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 4.4e-10 70.5 54 68.5
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-09 68.9 93 48.4
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 6.4e-09 66.6 118 46.6
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.4e-08 63.5 56 60.7
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 9.3e-08 62.8 47 68.1
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.2e-07 62.4 69 46.4
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 4.6e-07 60.5 156 30.1
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.0e-06 59.3 207 28.0
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-06 58.9 74 40.5
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.0e-06 57.8 72 41.7
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.0e-06 57.8 72 41.7
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 3.9e-06 57.4 61 57.4
MBI13_g14579_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.1e-06 57.0 61 45.9


User provided reference genes

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