Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 0.0e+00 1207.6 697 100.0
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.7e-262 908.3 616 79.9
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.5e-258 894.4 629 76.8
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-256 890.2 604 78.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.0e-256 888.6 614 81.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.5e-252 876.3 620 76.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.6e-252 875.5 620 76.1
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.2e-251 872.5 637 73.5
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.8e-251 871.7 629 77.1
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.5e-250 869.0 639 74.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.5e-250 869.0 631 75.0
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.0e-248 863.6 614 75.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.8e-248 862.8 650 72.3
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.8e-248 862.8 630 75.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 8.7e-248 860.5 638 76.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.5e-247 859.0 634 73.0
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-246 856.7 634 73.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.6e-246 856.3 617 75.5
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.4e-245 853.2 637 73.0
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.1e-245 851.7 616 75.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 5.3e-245 851.3 611 78.4
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.4e-244 848.6 627 73.7
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.5e-244 848.2 616 77.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 5.9e-244 847.8 624 76.9
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.3e-243 846.7 629 75.0
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.2e-243 845.9 652 73.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 5.0e-243 844.7 636 73.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 5.0e-243 844.7 643 72.0
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 6.5e-243 844.3 652 75.9
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 6.5e-243 844.3 637 73.8
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 7.2e-242 840.9 616 73.9
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.7e-241 839.0 641 74.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.1e-241 837.8 618 75.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.7e-240 834.3 618 74.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 6.7e-240 834.3 629 74.4
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.6e-239 832.4 617 72.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.3e-239 832.0 633 71.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.7e-239 831.2 620 74.7
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.8e-238 828.9 615 72.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.8e-238 828.9 629 74.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.8e-238 828.2 616 74.8
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-237 827.0 629 73.8
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.4e-237 826.6 616 71.9
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.8e-237 826.2 629 70.7
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 6.9e-237 824.3 711 67.7
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.0e-236 822.8 635 70.9
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.0e-236 822.8 629 74.6
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.4e-236 822.0 629 73.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 4.5e-236 821.6 629 73.3
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.0e-235 820.5 636 69.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.0e-235 818.1 636 70.9
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 8.5e-235 817.4 629 71.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.4e-234 816.6 616 73.7
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.2e-234 815.5 684 65.5
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 7.9e-233 810.8 665 67.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 8.8e-232 807.4 635 70.2
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.5e-231 806.6 629 70.3
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.6e-231 805.8 608 72.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.3e-231 805.4 668 69.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-230 803.5 629 69.5
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-229 800.0 641 69.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 5.3e-229 798.1 639 70.9
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 5.3e-229 798.1 632 69.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.0e-229 797.7 630 71.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 9.1e-229 797.3 630 71.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.6e-228 796.6 631 68.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.6e-228 795.8 629 70.6
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.5e-228 795.0 630 71.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-226 790.4 630 71.4
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.5e-226 790.0 630 71.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.5e-226 790.0 625 68.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.5e-226 789.3 629 72.0
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 5.5e-226 788.1 630 71.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 7.2e-226 787.7 630 71.9
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.1e-225 786.2 609 69.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 3.0e-224 782.3 636 66.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-223 780.4 646 69.2
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 4.4e-223 778.5 630 67.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 9.7e-223 777.3 614 68.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 5.3e-221 771.5 623 67.4
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 9.1e-221 770.8 584 71.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.6e-220 770.0 650 65.4
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.6e-220 770.0 619 71.7
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.0e-219 767.3 639 70.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.0e-219 767.3 648 65.6
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-219 767.3 648 65.6
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.0e-219 767.3 648 65.6
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.5e-218 763.5 616 68.2
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-218 763.5 646 68.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.5e-218 762.7 641 66.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.5e-218 761.5 544 75.7
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 7.2e-218 761.1 633 65.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.6e-217 758.8 635 70.7
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.0e-216 757.3 618 68.0
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.6e-215 752.7 621 67.3
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-214 750.0 504 77.6
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.8e-214 748.4 630 65.6
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.3e-214 748.0 653 66.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.5e-212 742.3 552 74.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 5.9e-212 741.5 639 64.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.3e-208 729.6 632 63.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 7.5e-207 724.5 626 66.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.4e-205 719.5 628 66.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.7e-204 716.1 626 63.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 3.3e-202 709.1 542 67.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.1e-201 706.4 645 61.7
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.7e-201 705.3 534 76.0
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-198 696.8 628 63.4
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 6.4e-198 694.9 517 77.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 6.2e-193 678.3 562 67.3
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.0e-193 677.9 620 61.1
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 3.0e-187 659.4 640 58.1
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.7e-182 643.7 519 70.5
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.2e-181 637.9 481 70.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 6.2e-177 625.2 630 57.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.5e-170 603.2 537 64.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.8e-169 599.7 622 56.9
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 7.1e-157 558.5 440 74.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 9.3e-157 558.1 631 53.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-153 547.7 433 74.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.9e-151 538.1 408 73.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 4.0e-144 516.2 627 46.7
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 6.9e-144 515.4 648 50.5
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.4e-143 513.1 528 55.1
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-136 491.1 433 61.7
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.0e-134 485.0 485 56.7
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 4.2e-133 479.6 632 44.0
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 4.5e-119 433.0 349 70.2
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 9.4e-117 425.2 373 61.4
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 7.9e-116 422.2 622 44.4
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.4e-114 416.4 593 44.0
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.0e-112 409.1 313 74.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 8.0e-108 395.6 626 43.3
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.9e-94 350.5 348 63.5
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.4e-74 283.9 190 76.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 3.2e-72 277.3 677 34.4
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.1e-69 268.9 325 53.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.5e-69 267.7 224 62.1
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 9.9e-66 255.8 179 78.2
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.1e-64 252.3 168 77.4
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 9.2e-64 249.2 189 64.6
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.5e-61 241.1 229 59.0
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 2.4e-59 234.6 702 31.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.5e-58 231.9 186 67.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.8e-52 211.1 170 70.0
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.6e-52 210.7 158 70.3
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.6e-52 210.7 155 71.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 9.0e-51 206.1 155 69.7
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.6e-50 204.5 155 69.7
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.8e-49 200.7 158 67.1
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.2e-48 197.2 653 30.3
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.0e-47 193.4 128 78.9
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 5.6e-45 186.8 117 83.8
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.2e-40 171.0 148 66.9
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.3e-40 169.5 136 70.6
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 7.9e-39 166.4 154 59.1
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.4e-32 144.8 92 83.7
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 4.2e-32 144.1 92 82.6
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 4.2e-32 144.1 92 82.6
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.2e-32 144.1 92 82.6
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.1e-29 136.0 189 43.9
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-26 125.9 97 67.0
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-24 119.0 90 64.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.6e-23 114.0 100 62.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.3e-19 100.5 58 89.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.0e-19 99.8 72 63.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.2e-18 99.4 75 62.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.4e-18 97.8 90 63.3
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.9e-18 97.1 120 50.0
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.7e-18 96.7 72 63.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-17 96.3 94 69.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.6e-15 89.0 74 66.2
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.6e-15 87.4 72 61.1
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 6.7e-14 83.6 69 59.4
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.1e-13 82.8 82 51.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-11 76.3 49 75.5
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 1.3e-09 69.3 48 77.1
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.5e-08 65.1 139 36.7
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.5e-08 65.1 78 44.9
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.2e-08 64.7 631 21.9
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 3.2e-08 64.7 49 67.3
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 1.0e-06 59.7 50 60.0
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 6.7e-06 57.0 47 57.4


User provided reference genes

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