Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.9e-249 865.5 485 100.0
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 8.1e-184 647.5 441 83.9
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 5.2e-183 644.8 441 84.4
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 4.4e-182 641.7 441 83.7
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 7.6e-182 641.0 444 82.9
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 4.9e-181 638.3 437 83.8
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 4.9e-181 638.3 438 84.2
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 1.4e-180 636.7 438 83.1
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.9e-180 636.3 438 83.8
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.9e-180 636.3 438 84.2
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 3.2e-180 635.6 441 83.2
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 2.1e-179 632.9 432 84.5
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 3.0e-178 629.0 442 82.8
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 3.6e-176 622.1 442 81.7
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.4e-175 619.4 477 76.1
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 3.1e-175 619.0 442 81.4
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 9.0e-175 617.5 441 79.1
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 9.0e-175 617.5 438 82.0
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 3.4e-174 615.5 438 81.1
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 4.5e-174 615.1 441 79.1
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 4.5e-174 615.1 435 80.2
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.2e-172 609.0 438 81.1
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 3.2e-172 609.0 438 80.8
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 3.2e-172 609.0 437 79.6
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 4.6e-171 605.1 411 83.9
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 1.3e-170 603.6 454 68.9
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.8e-170 603.2 442 79.2
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 2.3e-170 602.8 438 79.7
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 3.9e-170 602.1 434 81.1
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 6.7e-170 601.3 441 76.4
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 1.1e-169 600.5 441 78.2
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 2.5e-169 599.4 427 80.6
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 1.6e-168 596.7 441 78.7
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 2.4e-167 592.8 434 77.9
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.4e-166 589.0 462 66.0
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 7.6e-166 587.8 448 77.0
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 7.6e-166 587.8 440 77.7
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 1.7e-165 586.6 437 78.9
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 2.4e-164 582.8 453 75.3
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 3.2e-164 582.4 435 73.1
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 1.0e-162 577.4 445 78.4
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 3.9e-162 575.5 433 76.0
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 1.5e-161 573.5 408 80.6
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 4.3e-161 572.0 436 75.0
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 5.6e-161 571.6 411 82.5
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.4e-159 567.0 438 70.8
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 6.9e-159 564.7 435 66.2
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.0e-158 563.1 558 56.1
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.7e-157 560.1 443 74.9
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.2e-157 559.7 601 52.4
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 6.0e-155 551.6 436 74.8
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 1.1e-151 540.8 429 71.3
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 1.4e-151 540.4 437 72.3
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 3.1e-151 539.3 498 62.0
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 5.3e-151 538.5 475 60.2
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 2.0e-150 536.6 450 72.0
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 2.0e-150 536.6 428 61.2
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 4.5e-150 535.4 472 70.1
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 4.5e-150 535.4 434 73.7
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.1e-148 530.8 438 72.8
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 1.4e-148 530.4 432 73.4
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 7.2e-148 528.1 434 60.8
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.3e-146 523.9 434 69.8
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 2.5e-145 519.6 434 69.8
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 7.4e-145 518.1 434 68.0
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.3e-144 517.3 436 59.6
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 2.2e-144 516.5 433 69.5
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 4.1e-143 512.3 443 69.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-142 510.8 399 63.9
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.2e-142 510.8 434 66.8
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 4.7e-139 498.8 434 67.5
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.4e-138 497.3 441 62.6
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.4e-138 497.3 440 60.7
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 3.0e-138 496.1 444 67.1
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 1.1e-137 494.2 460 58.9
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 1.1e-137 494.2 399 73.4
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 1.5e-137 493.8 439 67.7
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 4.4e-137 492.3 435 67.8
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 7.4e-137 491.5 438 67.1
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 7.4e-137 491.5 336 83.9
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 1.3e-136 490.7 438 67.1
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 1.7e-133 480.3 435 57.5
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 5.0e-133 478.8 435 57.2
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 7.2e-132 474.9 477 63.9
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 6.1e-131 471.9 386 73.8
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 8.2e-128 461.5 452 60.6
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 2.0e-126 456.8 334 70.7
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 4.7e-123 445.7 266 83.5
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 5.9e-118 428.7 429 62.5
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.3e-109 401.0 438 61.9
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 4.2e-108 396.0 441 55.6
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.0e-94 349.0 332 57.8
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.3e-85 321.2 294 71.1
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.3e-85 320.5 274 63.5
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.6e-70 271.2 244 61.5
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 4.7e-67 259.6 220 77.3
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.1e-63 248.4 409 39.4
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.1e-62 244.2 144 81.2
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.9e-58 229.2 189 72.5
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 3.7e-51 206.8 341 38.7
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 1.3e-45 188.3 163 79.8
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 1.8e-42 177.9 147 87.8
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.2e-41 175.3 188 66.5
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 7.4e-36 156.0 180 52.2
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 5.3e-34 149.8 117 65.8
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 3.7e-27 127.1 89 71.9
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 4.8e-27 126.7 130 57.7
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 3.2e-23 114.0 147 38.1
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 7.2e-23 112.8 101 59.4
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 9.4e-23 112.5 89 69.7
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.7e-22 110.9 116 48.3
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 6.1e-22 109.8 144 41.7
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.5e-20 105.1 61 75.4
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 4.4e-20 103.6 141 48.9
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 9.7e-20 102.4 71 69.0
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 2.0e-17 94.7 75 60.0
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 6.7e-13 79.7 50 70.0
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 2.6e-12 77.8 55 70.9
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 9.7e-12 75.9 40 80.0
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 9.7e-12 75.9 40 85.0
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 3.1e-10 70.9 182 25.3
Lj1g0022487 Lotus japonicus HOM05D000836 ORTHO05D000709 2.6e-09 67.8 231 22.9
PGSC0003DMG400015323 Solanum tuberosum HOM05D000836 ORTHO05D000709 3.5e-09 67.4 173 27.7
Medtr1g050340 Medicago truncatula HOM05D000836 ORTHO05D000709 5.9e-09 66.6 231 22.9
Gohir.A07G201400 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.2e-08 64.7 233 21.9
PGR142G1073 Punica granatum HOM05D000836 ORTHO05D000709 3.8e-08 63.9 227 22.5
Manes.03G148800 Manihot esculenta HOM05D000836 ORTHO05D000709 5.0e-08 63.5 231 22.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.0e-08 63.5 212 25.0
Gohir.A11G137400 Gossypium hirsutum HOM05D000836 ORTHO05D000709 6.5e-08 63.2 233 22.3
Rhsim12G0194700 Rhododendron simsii HOM05D003006 ORTHO05D003438 6.5e-08 63.2 240 25.0
Manes.18G038500 Manihot esculenta HOM05D002332 ORTHO05D002509 8.5e-08 62.8 202 24.3
Gohir.D07G207700 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.1e-07 62.4 233 21.9
Gorai.001G234100 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.1e-07 62.4 233 21.9
Gohir.D11G143800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.9e-07 61.6 233 22.3
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 2.5e-07 61.2 233 22.3
Sabra02G0184200 Salix brachista HOM05D000836 ORTHO05D000709 4.2e-07 60.5 238 23.1
CiPaw.02G067000 Carya illinoinensis HOM05D000836 ORTHO05D000709 5.5e-07 60.1 231 22.5
Duzib235G0973 Durio zibethinus HOM05D003006 ORTHO05D003438 5.5e-07 60.1 211 24.6
GSVIVG01017219001 Vitis vinifera HOM05D003006 ORTHO05D003438 5.5e-07 60.1 215 24.2
HanXRQChr16g0500621 Helianthus annuus HOM05D003006 ORTHO05D003438 7.2e-07 59.7 221 24.0
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 7.2e-07 59.7 125 29.6
CSS0036684 Camellia sinensis var. sinensis HOM05D003006 ORTHO05D003438 9.4e-07 59.3 236 23.7
Dinv38082 Davidia involucrata HOM05D003006 ORTHO05D003438 9.4e-07 59.3 221 24.4
Potri.014G027200 Populus trichocarpa HOM05D002332 ORTHO05D002509 9.4e-07 59.3 200 24.0
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 9.4e-07 59.3 201 23.4
THA.LOC104801044 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 9.4e-07 59.3 235 22.1
THA.LOC104809014 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 9.4e-07 59.3 215 24.2
Thecc.06G076400 Theobroma cacao HOM05D003006 ORTHO05D003438 9.4e-07 59.3 215 24.7
COL.COLO4_12868 Corchorus olitorius HOM05D003006 ORTHO05D003438 1.2e-06 58.9 216 23.6
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 1.2e-06 58.9 226 22.6
Pp3c3_13590 Physcomitrium patens HOM05D003006 ORTHO05D003438 1.2e-06 58.9 241 24.1
vmacro15917 Vaccinium macrocarpon HOM05D000836 ORTHO05D000709 1.2e-06 58.9 218 24.8
PSO170G2454 Papaver somniferum HOM05D001715 ORTHO05D003849 1.6e-06 58.5 191 23.6
Sopen08g002880 Solanum pennellii HOM05D000836 ORTHO05D000709 1.6e-06 58.5 201 24.4
Sabra14G0018600 Salix brachista HOM05D002332 ORTHO05D002509 2.1e-06 58.2 200 23.5
GSVIVG01015458001 Vitis vinifera HOM05D000836 ORTHO05D000709 2.1e-06 58.2 239 23.8
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 2.7e-06 57.8 204 23.5
Eucgr.F02555 Eucalyptus grandis HOM05D003006 ORTHO05D003438 2.7e-06 57.8 223 23.8
RcHm_v2.0_Chr6g0284941 Rosa chinensis HOM05D000836 ORTHO05D000709 2.7e-06 57.8 239 22.6
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 3.6e-06 57.4 218 24.3
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 3.6e-06 57.4 218 24.3
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 3.6e-06 57.4 194 22.2
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 4.7e-06 57.0 212 22.6
FAN20G1644 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.7e-06 57.0 208 22.1
Lj5g0025520 Lotus japonicus HOM05D000836 ORTHO05D000709 4.7e-06 57.0 206 24.8
Manes.11G049000 Manihot esculenta HOM05D003006 ORTHO05D003438 4.7e-06 57.0 220 23.6
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 6.1e-06 56.6 163 23.9
Thhalv10021071m.g Eutrema salsugineum HOM05D003006 ORTHO05D003438 6.1e-06 56.6 226 22.6
FvH4_2g34270 Fragaria vesca HOM05D002332 ORTHO05D002509 6.1e-06 56.6 208 22.1
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.1e-06 56.6 208 22.1
Lsat_1_v5_gn_4_104701 Lactuca sativa HOM05D003006 ORTHO05D003438 6.1e-06 56.6 218 23.9
Manes.04G118500 Manihot esculenta HOM05D003006 ORTHO05D003438 6.1e-06 56.6 216 22.7
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 6.1e-06 56.6 222 23.9
Aqoxy7G03782 Aquilegia oxysepala HOM05D000836 ORTHO05D000709 8.0e-06 56.2 233 23.2
BcaC07g41498 Brassica carinata HOM05D003006 ORTHO05D003438 8.0e-06 56.2 220 24.5
Ca_06907_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 8.0e-06 56.2 200 23.5
Medtr2g054920 Medicago truncatula HOM05D003006 ORTHO05D003438 8.0e-06 56.2 240 24.6
Nn2g11859 Nelumbo nucifera HOM05D000836 ORTHO05D000709 8.0e-06 56.2 233 23.2
PSO170G2486 Papaver somniferum HOM05D001715 ORTHO05D003849 8.0e-06 56.2 189 23.3
PSO170G5376 Papaver somniferum HOM05D001715 ORTHO05D003849 8.0e-06 56.2 189 23.3
GSVIVG01028646001 Vitis vinifera HOM05D000836 ORTHO05D000709 8.0e-06 56.2 233 22.7


User provided reference genes

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