Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.3e-25 116.7 61 100.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.9e-15 83.6 58 75.9
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.9e-15 83.6 58 75.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.9e-15 83.6 58 75.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 2.9e-14 81.3 58 74.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.8e-14 80.9 58 72.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 5.0e-14 80.5 58 70.7
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 5.0e-14 80.5 58 70.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 5.0e-14 80.5 58 72.4
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.5e-14 80.1 58 70.7
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 6.5e-14 80.1 58 72.4
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 6.5e-14 80.1 58 72.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 8.5e-14 79.7 58 69.0
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 8.5e-14 79.7 58 72.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.9e-13 78.6 58 69.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.9e-13 78.6 58 70.7
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 70.7
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 69.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 70.7
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 70.7
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 70.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 70.7
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 69.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.5e-13 78.2 58 69.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.2e-13 77.8 58 69.0
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.2e-13 77.8 58 67.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.2e-13 77.8 58 67.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.2e-13 77.8 58 70.7
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.2e-13 77.8 58 69.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 4.2e-13 77.4 58 67.2
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.5e-13 77.0 58 69.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 5.5e-13 77.0 58 69.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 5.5e-13 77.0 58 69.0
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 5.5e-13 77.0 56 71.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.2e-13 76.6 58 65.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 7.2e-13 76.6 58 69.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 7.2e-13 76.6 58 67.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 7.2e-13 76.6 56 71.4
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 7.2e-13 76.6 58 69.0
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 7.2e-13 76.6 58 67.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.4e-13 76.3 58 69.0
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 9.4e-13 76.3 58 67.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 9.4e-13 76.3 58 69.0
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 9.4e-13 76.3 56 69.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.2e-12 75.9 58 69.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-12 75.9 56 69.6
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-12 75.9 56 69.6
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.2e-12 75.9 58 69.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.2e-12 75.9 58 65.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-12 75.1 58 65.5
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.7e-12 74.7 58 65.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-12 74.7 58 65.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.7e-12 74.7 56 69.6
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.7e-12 74.7 58 65.5
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.7e-12 74.7 56 69.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.6e-12 74.3 58 63.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.6e-12 74.3 58 67.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.6e-12 74.3 58 67.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.6e-12 73.9 58 65.5
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.6e-12 73.9 58 65.5
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 4.6e-12 73.9 58 63.8
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 4.6e-12 73.9 58 63.8
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.6e-12 73.9 58 63.8
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 6.1e-12 73.6 56 67.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 6.1e-12 73.6 58 65.5
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 6.1e-12 73.6 58 65.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.1e-12 73.6 58 67.2
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 7.9e-12 73.2 58 62.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 7.9e-12 73.2 58 60.3
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.0e-11 72.8 58 63.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.0e-11 72.8 58 65.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-11 72.4 58 63.8
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.4e-11 72.4 58 63.8
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 63.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 63.8
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 65.5
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 63.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 63.8
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.8e-11 72.0 58 62.1
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-11 71.6 58 63.8
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.3e-11 71.6 58 60.3
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.3e-11 71.6 58 63.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.3e-11 71.6 57 66.7
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.0e-11 71.2 58 63.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.0e-11 71.2 58 62.1
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 3.0e-11 71.2 58 62.1
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.0e-11 71.2 56 66.1
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 3.9e-11 70.9 58 62.1
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 3.9e-11 70.9 58 62.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 3.9e-11 70.9 58 63.8
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.9e-11 70.9 56 64.3
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.9e-11 70.9 57 63.2
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.1e-11 70.5 58 62.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.1e-11 70.5 58 62.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.7e-11 70.1 56 64.3
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 6.7e-11 70.1 56 64.3
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 8.8e-11 69.7 58 60.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 8.8e-11 69.7 58 60.3
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.1e-10 69.3 58 60.3
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-10 69.3 57 61.4
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-10 68.9 58 62.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.5e-10 68.9 58 62.1
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.5e-10 68.9 58 58.6
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 2.6e-10 68.2 58 62.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 3.3e-10 67.8 56 60.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.3e-10 67.8 56 60.7
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 9.7e-10 66.2 55 56.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 9.7e-10 66.2 56 58.9
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.3e-09 65.9 56 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.7e-09 65.5 58 55.2
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.7e-09 65.5 55 54.5
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 2.2e-09 65.1 61 60.7
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-09 65.1 61 60.7
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 2.2e-09 65.1 61 60.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.8e-09 64.7 58 55.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 2.8e-09 64.7 58 62.1
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 4.8e-09 63.9 56 58.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.8e-09 63.9 56 58.9
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.8e-09 63.9 56 58.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.3e-09 63.5 56 58.9
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.2e-09 63.2 56 58.9
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.2e-07 59.3 58 51.7
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 4.5e-07 57.4 58 51.7
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.5e-07 57.4 56 53.6
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 7.7e-07 56.6 60 48.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.7e-06 55.5 56 48.2
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.2e-06 55.1 55 47.3


User provided reference genes

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